Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq2112 163 1e-35 >seq2112 Length=10038 Score = 163 bits (180), Expect = 1e-35 Identities = 238/333 (71%), Gaps = 25/333 (8%) Strand=Plus/Minus Query 9974 TCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCCGA 10033 |||||||||||||||| |||||||| |||||| ||||||||| ||| || || Sbjct 9326 TCAACAAAGTCATCCTGGTCGGCAACCTCGGCAACGACCCGGACGTGAAGTACACCCAGA 9267 Query 10034 GCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCG-CTACAAGGACAAGGCG 10092 ||||| || ||| || |||| |||| || || ||| | || | ||||||||||| Sbjct 9266 GCGGCATGGCGATCACCCGCATCAGCCTGGCCACCACC-AGCGTCCGCAAGGACAAGGAT 9208 Query 10093 AGCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGCC 10152 || | || ||||| ||||||||||||||||| ||||||||| |||| | Sbjct 9207 GGCAACCAGC---AGGAACGTACCGAATGGCACCGCGTGGTGTTCTTCGGCAAGCTCGGC 9151 Query 10153 GAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCATCCGC 10212 ||||||| || ||||||||||||||||||| |||||||| |||| ||| || | ||| Sbjct 9150 GAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGCAGCCTGCGC 9091 Query 10213 -ACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGC---------TACACGACCGAGAT 10262 ||| |||| || ||||||||||| || ||| | ||||| || Sbjct 9090 TACG-ACAAGT---------ACACCGGCCAGGATGGCGTGGAGAAGTACTCCACCGACAT 9041 Query 10263 CGTCGCCGAGAAGATGCAGATGCTCGGCGACCG 10295 ||| ||||| | ||||||||||| |||| ||| Sbjct 9040 CGTTGCCGATGAAATGCAGATGCTGGGCGGCCG 9008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197781168937242