Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq1878 111 4e-20 >seq1878 Length=10347 Score = 111 bits (122), Expect = 4e-20 Identities = 291/439 (66%), Gaps = 20/439 (5%) Strand=Plus/Plus Query 33547 TCATTCGCGTTCCTGCGAACTATGACCCCGACACCCGCAGCTATACCGGCACCTGGGATG 33606 |||| ||||| || ||||||||||| || ||| || | || |||||||| | Sbjct 9741 TCATCCGCGTCCCGTCGAACTATGACGAGGATCGTCGCGCATACGCGGGAACCTGGGACG 9800 Query 33607 GCACGTTTAAATGGGCGTGGACGGATAACCCGGCCTGGGTGTTTTACGACCTGGTGATCA 33666 | || || || |||||||| || ||||| || ||| | || || ||||| |||| || Sbjct 9801 GAACTTTCAAGCTTGCGTGGACTGACAACCCTGCGTGGATTTTCTATGACCTCGTGACCA 9860 Query 33667 CTGATCGCTTCGGACTCGGCGACCGGCTGGACGCCGATAACGTGGACAAATGGGCGCTCT 33726 |||||| | || || || || || | | ||| | |||| || |||| | | | Sbjct 9861 ATGATCGGTATGGCCTGGGTGAGCGCATACCCTCCGGTTGGTTGGATAAGTGGGGGTTGT 9920 Query 33727 ACCAGGTGGCGCAATACTGCGATCAGATGGTGCCGGACGGCAGGGGCGGCGACGGCAAAG 33786 | ||| | || | ||||||||| | | ||||| || || ||||| |||| | Sbjct 9921 ATCAGATAGCCCGGTACTGCGATGAACTAGTGCCCGATGGATTTGGCGG-----GCAA-G 9974 Query 33787 AGCCACGCTATATGTGCAACGTCTACGTGCAG--AGCCGGGCCGACGCATTCACGGTTTT 33844 ||||||||| | |||||| ||| ||||| |||| || ||||| | |||||| Sbjct 9975 AGCCACGCTTCACCTGCAACTGCTATTTGCAGACAGCC--GCGGACGCGTATCGGGTTTT 10032 Query 33845 GCGCGACTTTGCGGCCATCTTCCGGGGCATGACTTACTGGGGTGGCGA-----TCAGCTC 33899 || ||| | ||| | | |||||||| ||||| ||||| ||||| |||| || Sbjct 10033 GCAGGACCTGGCGTCGGTGTTCCGGGGAATGACGTACTG----GGCGAATTCGTCAG-TC 10087 Query 33900 GTTACGCTGGCAGACATGCCGCGCGATGTTGATTATGTCTACACGCGCGCGAATGTGGTT 33959 || | | ||||| ||||| ||||| | ||| || |||| || || ||| | Sbjct 10088 TTTGCCGTCGCAGATATGCCCGGCGATCCCGTCTATACCTTCACGTCGGCCAACGTGATC 10147 Query 33960 GAAGGGCGCTTCACTTACG 33978 || || || || | ||||| Sbjct 10148 GACGGCCGATTTAATTACG 10166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127790269421568