Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 >seq3 Length=15630833 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || | ||| || || || || ||||| || |||||||| | Sbjct 4185758 CCTCCACGGAGACGAAGGACAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGAC 4185699 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| ||||||||||| || || || || | | ||||| || || || Sbjct 4185698 AGAGTTCTACCATCTTCCAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGG 4185639 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||| || || || || || |||| | |||||||| | ||| || Sbjct 4185638 ATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACC 4185579 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| || || || || | ||| || || || |||||||| Sbjct 4185578 TCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 4185532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396262708489893