Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq2875 336 3e-87 >seq2875 Length=2430 Score = 336 bits (372), Expect = 3e-87 Identities = 714/1041 (69%), Gaps = 46/1041 (4%) Strand=Plus/Minus Query 136648 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 136707 ||||||||||| || || || || ||||| || | ||| || ||||| ||| ||| Sbjct 1673 CCCTTCACGCACAGCACCTGGCGCAGCGTGTGCACCACGTCGACCAGGTCGAGCTGCGCC 1614 Query 136708 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCC 136767 |||| || ||||||| |||||| || ||| ||||| | |||||| |||| Sbjct 1613 GCCATCACGTCGTCGATCGACTTGTACGCGGCCGGTGACTCGTCCAGCACGCCGCTGTCC 1554 Query 136768 TTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAGGTCGCCTTG 136827 |||||||| |||||| | |||| || | | || | |||| |||| || || | Sbjct 1553 TTGCGGCATTCCACGTGCGCGGTTGCTTCGCGATGCTGGGCCAGCGTGA---TCTGCTGG 1497 Query 136828 GCCTGGGT-CCGCGAC--ATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCC 136884 | ||| || || | ||| |||||| || || || ||| | ||| |||| Sbjct 1496 CGCGCGGTGCCACGGCTCATCACCCGGCCGGCACCATGGCTGCAGCTGTGGAAGCTGTCC 1437 Query 136885 GCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--CCCATCGAGCCGGGGATGATCC 136942 || ||||||||||| |||||||||||| || || ||||| |||||| ||||| | Sbjct 1436 GCGTTGCCCTTGCCACGCACGATGTAG--CTGCGCGTGCCCATGCTGCCGGGAATGATGC 1379 Query 136943 CGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGA 137002 | | || | ||| |||| ||||| |||||||| ||||| | | | || |||| Sbjct 1378 CCAGCTCGCCCTCGCGCGCACTGACCGCACCCTTGCGCGTCACCAGCAGCTCCTGGTCGT 1319 Query 137003 AGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCT-TCCTTGTCCGTCTTG 137061 ||| |||||||| ||||||||||| |||||||||||||| || || | | || | Sbjct 1318 GGTGCGTCTCCTTCTGCACGTAGTTGTGATGGCAGTTCACCGCCATCGCTGCCAG-CTGG 1260 Query 137062 AACGGCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGG 137121 ||| |||||||| || | | |||| | |||| ||||| |||||| ||||||| Sbjct 1259 AACTTCGGCAGGC--GATGGC-GCATCTCGGCCAGCACCCGCGACATCATTGCCTCGCGG 1203 Query 137122 TTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGC 137181 || ||| ||| ||||||| |||| | || ||||| |||||||| | |||| |||| Sbjct 1202 TTCTGCCGGGCGTAGTCCTGCGCCCACGACACCGCTTCAACGTAGTCATCGAACAGCGGC 1143 Query 137182 TCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGT-CACGACGCAG 137240 |||||||| || | || |||||||||||| || | | | ||| |||| ||| | Sbjct 1142 TCGCCTTCCATGAAGAACGCCAGGTCCTTGTCCGGCAGGTGGAAGCCGAGCACG-CGCCG 1084 Query 137241 CATCATCTCCTTG---GCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCG 137297 || |||| | ||||||||||||||| | |||||| ||||||| |||||| Sbjct 1083 GGCCAGTTCCTCGCGCGCCTTCTCGATGAAGTAGGTGCCGATCAGGTTGCCGGTGCCGCG 1024 Query 137298 CGAGCCCGAGTGGAGCATCACCCAGAC-GCGCTGGTCCTCGTCGAGGCAGACCTCGATGA 137356 || || ||| ||||||||||| || | | ||| ||||| ||||| | ||||||| Sbjct 1023 TGATCCGCTGTGCAGCATCACCCACACCGTGTCCGTC-TCGTCCAGGCACAGTTCGATGA 965 Query 137357 AGTGGTTGCCGCCGCCCAGGGTGCCCAGTT---GGACCACGCTGTTGGCG-TTCTTCAGC 137412 ||||||||||||||||||| || ||||| | || ||| ||| || | ||| || Sbjct 964 AGTGGTTGCCGCCGCCCAGCGTACCCAGCTGGCGGTCCAGCTTGTCGGTGCGGATTCTGC 905 Query 137413 GCCGGGTACTTCTCGCAGAGCTTGTCGA-ACCGCGCCTCCAGGCCCGAATCGACCCACTT 137471 ||| ||| || || ||| || | |||| || ||| ||||| | | ||| Sbjct 904 ----GGTGCTTGTCCTTGATCTTCTCCAGACCG-GCGGCCA-GCCCGGACTGCACCAGCC 851 Query 137472 GCGCA-GGATCGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCCCGACGGACCCGGCC 137530 ||| | |||| || ||| |||| | | || || | ||||| | || Sbjct 850 GCGTATGGATGCTGTCGGGCATGCGGTGGTGCTCG---CCGCCGC------GTCC---GT 803 Query 137531 CGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGACAGGCTGTCGGGAAGGT 137590 |||| ||||| | | ||||||| ||| |||| |||| ||||| |||| Sbjct 802 TGCCGACCGGGATGCTGCGCTCGATGCTGTTGCGCAGCTGCCGCAGGTCATCGGGCAGGT 743 Query 137591 CCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGG 137650 | ||| ||| | ||||| ||||| ||||||||||||||||||||||||||| | Sbjct 742 CGTTGGCGCGCAGCGTAGTGCGCACCGCGGCCATGCCGCAGCCGATGTCGACGCCGACCG 683 Query 137651 CGGCCGGGATGATCGCGCCCT 137671 ||||||||||||||||||||| Sbjct 682 CGGCCGGGATGATCGCGCCCT 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690115971526800