Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq2875 349 6e-91 seq1297 89.7 9e-13 seq1245 89.7 9e-13 >seq2875 Length=2430 Score = 349 bits (386), Expect = 6e-91 Identities = 820/1210 (68%), Gaps = 61/1210 (5%) Strand=Plus/Minus Query 168273 CCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGGGCC 168332 ||||| ||||||| |||||| || ||| || | || |||| || ||| ||| Sbjct 1673 CCCTTCACGCACAGCACCTGGCGCAGCGTGTGCACCACGTCGACCAGGTCGAGCTGCGCC 1614 Query 168333 GCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCGTCC 168392 ||||| ||| ||||||| |||||| || ||| | |||||| | |||||| |||| Sbjct 1613 GCCATCACGTCGTCGATCGACTTGTACGCGGCCGGTGACTCGTCCAGCACGCCGCTGTCC 1554 Query 168393 TTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAGCTTCTTC 168452 |||||||| || ||| | || |||||| |||| | |||| | || ||| | Sbjct 1553 TTGCGGCATTCCACGTGCGCGGTTGCTTCGCGATGCTGGGCCAGCGTGATCTGCTGGCGC 1494 Query 168453 GCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCACGAGCAGAAGGCGTCAGCG 168512 || | ||| ||| || |||||||| || |||||||| | |||| ||| ||| Sbjct 1493 GCGGTGCCACGGCTCATCACCCGGCCGGCACCATGGCTGCAGCTGTGGAAGCTGTCCGCG 1434 Query 168513 TGGCCCTTGCCGCGCACGATGAACGACTTGGC--GCCCATCGAACCCGGAATGATGCCGA 168570 | ||||||||| ||||||||| | || || |||||| || ||||||||||| | Sbjct 1433 TTGCCCTTGCCACGCACGATGTA--GCTGCGCGTGCCCATGCTGCCGGGAATGATGCCCA 1376 Query 168571 GTTCGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCGAAGT 168630 | ||| ||| |||| ||||| |||||||| ||||| | | |||| | || || Sbjct 1375 GCTCGCCCTCGCGCGCACTGACCGCACCCTTGCGCGTCACCAGCAGCTCCTGGTCGTGGT 1316 Query 168631 GGCGT-TCCTTGTTGACGTAGTTGTGGTGACAGTTCACCG-CTTCCTTGTCGGTCTTGAA 168688 |||| ||||| | ||||||||||| || |||||||||| | || || | | || ||| Sbjct 1315 -GCGTCTCCTTCTGCACGTAGTTGTGATGGCAGTTCACCGCCATCGCTGCCAG-CTGGAA 1258 Query 168689 CGCCGGCACGAACTCCCGGATCGCCTTGAGCACGCGGACCATCATCATGTCGCGGTTCAG 168748 | ||||| | | || ||| | ||||| || |||||| ||||||||| | Sbjct 1257 CTTCGGCAGGCGATGGCGCATCTCGGCCAGCACCCGCGACATCATTGCCTCGCGGTTCTG 1198 Query 168749 GCGCGCGAAGTCTTGCGCCCAGCCCACGGCTTCGATGTAGTCGTCGAAATCCTGCTCGCC 168808 || ||| |||| |||||||| ||| ||||| | |||||| ||||| | ||||||| Sbjct 1197 CCGGGCGTAGTCCTGCGCCCACGACACCGCTTCAACGTAGTCATCGAACAGCGGCTCGCC 1138 Query 168809 CACTTCGAGCCACGCGAGGTTCTCGTCCTGCGGGCGCA---CATG---GCGCTTTGCCAG 168862 | || |||| |||| || |||| || || | | | | |||| ||||| Sbjct 1137 TTCCATGAAGAACGCCAGGTCCTTGTCCGGCAGGTGGAAGCCGAGCACGCGCCGGGCCAG 1078 Query 168863 GGCGTTCTTCGCCTTCTCGATGAAGTAGTTGCCGATCACGTTGCCGACGCCGCGCGATCC 168922 | | ||||||||||||||||||| ||||||||| ||||||| |||||| ||||| Sbjct 1077 TTCCTCGCGCGCCTTCTCGATGAAGTAGGTGCCGATCAGGTTGCCGGTGCCGCGTGATCC 1018 Query 168923 CGAGTGCAGCATCACCCACACGTTCGGGTCCGTCGTCCCCTGATCGGTCTGGATGCAGAT 168982 |||||||||||||||||| || ||||||| ||| | | ||| | Sbjct 1017 GCTGTGCAGCATCACCCACAC---CGTGTCCGTC---------TCG---TCCAGGCACAG 973 Query 168983 TTCGATGAAGTGGTTGCCGCCACCCAGCGACCCGAGTTG--GGTCACGTTGTTCGACGTC 169040 ||||||||||||||||||||| ||||||| || || || |||| | | ||| || Sbjct 972 TTCGATGAAGTGGTTGCCGCCGCCCAGCGTACCCAGCTGGCGGTCCAGCTTGTCG--GTG 915 Query 169041 TCCAAGATCGGATGCTTTTCGCACAGCTTCTTGA-ACCGCGCCTCCAGCCCAGAATCGAT 169099 | | | ||||| || | ||||| | |||| || ||||||| || | | Sbjct 914 CGGATTCTGCGGTGCTTGTCCTTGATCTTCTCCAGACCG-GCGGCCAGCCCGGACT-GCA 857 Query 169100 CCAGGCACGCATGATAGAGTTCGGGATGCCATGACGACCCGGTTCCTGCCACGAACCCTT 169159 |||| | || ||| | ||||| |||| ||| | || | || || Sbjct 856 CCAGCCGCGTATGGATGCTGTCGGG----CATG------CGG-TGGTG-CTCG---CCGC 812 Query 169160 CGCGCCCGGCCCGCCGTGCGGAACCGCACGTTCGATCGCCG-AACGCATC-GCCGCCAAG 169217 |||| ||| |||| ||| | || ||||| || | |||| | |||| || | Sbjct 811 CGCGTCCG--TTGCCGACCGGGATGCTGCGCTCGAT-GCTGTTGCGCAGCTGCCG-CAGG 756 Query 169218 TTGTCCGGCAGTTGCGAAGCAGTCAGCGTGGTGCGCACAGCCATCATGCCGCAGCCGATG 169277 | || ||||| | || |||||| |||||||| || |||||||||||||||| Sbjct 755 TCATCGGGCAGGTCGTTGGCGCGCAGCGTAGTGCGCACCGCGGCCATGCCGCAGCCGATG 696 Query 169278 TCGACGCCGACCGCGTACGGGATCACCGCATCCTTGGTCGGGATCACCGAACCAACGGCT 169337 ||||||||||||||| |||||| | ||| ||| |||||||||||||| || |||| Sbjct 695 TCGACGCCGACCGCGGCCGGGATGATCGCGCCCTGCGTCGGGATCACCGAGCCCACGGTC 636 Query 169338 GCGCCGTACCCGGCGTGGACGTCGGGCATCACCGCGACGTGCTTGAACACGAACGGCAGC 169397 ||||| | || ||| ||||| |||||||| || || | |||||||| | | Sbjct 635 GCGCCCTTGCCCAGGTGCACGTCCGGCATCACGGCCACCCACGGCCCGACGAACGGGATC 576 Query 169398 CCGGCGACGTTGTGGGCCTGATCTTCGGCGCC-GCGC-TCGAAAGGCACACCGTCGACCC 169455 |||||| |||| | ||| || | ||||| |||| || | |||||||||| ||||| Sbjct 575 GCGGCGATGTTGCGCAGCTGCTCAT--GCGCCTGCGCTTCCAGCGGCACACCGTTGACCC 518 Query 169456 AAGCCTTGAT 169465 | ||||||| Sbjct 517 AGCCCTTGAT 508 >seq1297 Length=13545 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 13080 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 13021 Query 133023 CCCTCCCCCGCATCCACAA 133041 || |||||||| ||| || Sbjct 13020 CCTGCCCCCGCAACCAAAA 13002 >seq1245 Length=15834 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 15369 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 15310 Query 133023 CCCTCCCCCGCATCCACAA 133041 || |||||||| ||| || Sbjct 15309 CCTGCCCCCGCAACCAAAA 15291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895730020687080