Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq2875 327 2e-84 >seq2875 Length=2430 Score = 327 bits (362), Expect = 2e-84 Identities = 714/1042 (69%), Gaps = 48/1042 (5%) Strand=Plus/Minus Query 135408 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 135467 ||||||||||| || || || || ||||| || | ||| || ||||| ||| ||| Sbjct 1673 CCCTTCACGCACAGCACCTGGCGCAGCGTGTGCACCACGTCGACCAGGTCGAGCTGCGCC 1614 Query 135468 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCC 135527 |||| || ||||||| |||||| || ||| ||||| | |||||| |||| Sbjct 1613 GCCATCACGTCGTCGATCGACTTGTACGCGGCCGGTGACTCGTCCAGCACGCCGCTGTCC 1554 Query 135528 TTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAGGTCGCCTTG 135587 || ||||| |||||| | |||| || | | || | |||| |||| || || | Sbjct 1553 TTGCGGCATTCCACGTGCGCGGTTGCTTCGCGATGCTGGGCCAGCGTGA---TCTGCTGG 1497 Query 135588 GCCTGGGT-CCGCGAC--ATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCC 135644 | ||| || || | ||| |||||| || || || ||| | ||| |||| Sbjct 1496 CGCGCGGTGCCACGGCTCATCACCCGGCCGGCACCATGGCTGCAGCTGTGGAAGCTGTCC 1437 Query 135645 GCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--CCCATCGAGCCGGGGATGATCC 135702 || ||||||||||| |||||||||||| || || ||||| |||||| ||||| | Sbjct 1436 GCGTTGCCCTTGCCACGCACGATGTAG--CTGCGCGTGCCCATGCTGCCGGGAATGATGC 1379 Query 135703 CGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGA 135762 | | || | ||| |||| ||||| |||||||| ||||| | | | || |||| Sbjct 1378 CCAGCTCGCCCTCGCGCGCACTGACCGCACCCTTGCGCGTCACCAGCAGCTCCTGGTCGT 1319 Query 135763 AGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCG-CTTCCTTGTCCGTCTTG 135821 ||| |||||||| ||||||||||| ||||||||||||| | || || || || | Sbjct 1318 GGTGCGTCTCCTTCTGCACGTAGTTGTGATGGCAGTTCACCGCCATCGCTG-CCAGCTGG 1260 Query 135822 AACGGCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGG 135881 ||| ||||||| ||| | ||||| | |||| ||||| |||||| ||||||| Sbjct 1259 AACTTCGGCAGG--CGATG-GCGCATCTCGGCCAGCACCCGCGACATCATTGCCTCGCGG 1203 Query 135882 TTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGT 135941 || ||| ||| ||||||| |||| | || ||||| |||||||| | |||| ||| Sbjct 1202 TTCTGCCGGGCGTAGTCCTGCGCCCACGACACCGCTTCAACGTAGTCATCGAACAGCGGC 1143 Query 135942 TCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTG-CGCCCGTCACGCCGCAG 136000 |||||||| || | || |||||||||||| || | | | ||| |||| ||| | Sbjct 1142 TCGCCTTCCATGAAGAACGCCAGGTCCTTGTCCGGCAGGTGGAAGCCGAGCACG-CGCCG 1084 Query 136001 CATCATCTCCTTG---GCCTTCTCGATGAAGATACG-GCCGATGGTGTTGCCGACGCCGC 136056 || |||| | ||||||||||||||| || | |||||| ||||||| ||||| Sbjct 1083 GGCCAGTTCCTCGCGCGCCTTCTCGATGAAG-TAGGTGCCGATCAGGTTGCCGGTGCCGC 1025 Query 136057 GCGAGCCCGAGTGGAGCATCACCCAGA-CGCGCTGGTCCTCGTCGAGGCAGACCTCGATG 136115 | || || ||| ||||||||||| | || | || |||||| ||||| | |||||| Sbjct 1024 GTGATCCGCTGTGCAGCATCACCCACACCGTGTCCGT-CTCGTCCAGGCACAGTTCGATG 966 Query 136116 AAGTGGTTGCCGCCGCCCAGGGTGCCCAGTT---GGACCACGCTGTTGGCG-TTCTTCAG 136171 |||||||||||||||||||| || ||||| | || ||| ||| || | ||| | Sbjct 965 AAGTGGTTGCCGCCGCCCAGCGTACCCAGCTGGCGGTCCAGCTTGTCGGTGCGGATTCTG 906 Query 136172 CGCCGGGTACTTCTCGCAGAGCTTGTCGA-ACCGCGCCTCCAGGCCCGAGTCGACCCACT 136230 | ||| ||| || || ||| || | |||| || |||| || || | | ||| Sbjct 905 C----GGTGCTTGTCCTTGATCTTCTCCAGACCG-GCGGCCAGCCCGGACT-GCACCAGC 852 Query 136231 TGCGCA-GGATCGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCCCGACGGACCCGGC 136289 ||| | |||| || ||| |||| | | || || | ||||| | || Sbjct 851 CGCGTATGGATGCTGTCGGGCATGCGGTGGTGCTCG---CCGCCGC------GTCC---G 804 Query 136290 CCGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGACAGGCTGTCGGGAAGG 136349 |||| ||||| | | ||||||| ||| |||| |||| ||||| ||| Sbjct 803 TTGCCGACCGGGATGCTGCGCTCGATGCTGTTGCGCAGCTGCCGCAGGTCATCGGGCAGG 744 Query 136350 TCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACG 136409 || ||| ||| | ||||| ||||| ||||||||||||||||||||||||||| Sbjct 743 TCGTTGGCGCGCAGCGTAGTGCGCACCGCGGCCATGCCGCAGCCGATGTCGACGCCGACC 684 Query 136410 GCGGCCGGGATGATCGCGCCCT 136431 |||||||||||||||||||||| Sbjct 683 GCGGCCGGGATGATCGCGCCCT 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700416353185560