Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq2875 392 5e-104 >seq2875 Length=2430 Score = 392 bits (434), Expect = 5e-104 Identities = 671/956 (70%), Gaps = 32/956 (3%) Strand=Plus/Minus Query 139616 GTCGGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--CCCATCGAGCCGGGGATG 139673 ||| |||||||||||||| |||||||||||| || || ||||| |||||| ||| Sbjct 1440 GTCCGCGTTGCCCTTGCCACGCACGATGTAG--CTGCGCGTGCCCATGCTGCCGGGAATG 1383 Query 139674 ATGCCGAACTGGTCCTTCTGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCG 139733 ||||| | || | ||| | || ||||| |||||||| ||||| | | | || | Sbjct 1382 ATGCCCAGCTCGCCCTCGCGCGCACTGACCGCACCCTTGCGCGTCACCAGCAGCTCCTGG 1323 Query 139734 TCGAAGTGGAACTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCT-TCCTTGTCCGT 139792 ||| ||| ||||||||| ||||||||||| |||||||||||||| || || | | Sbjct 1322 TCGTGGTGCGTCTCCTTCTGCACGTAGTTGTGATGGCAGTTCACCGCCATCGCTGCCAG- 1264 Query 139793 CTTGAAGGGCGGCAGGCCCGAGGCGCGCATGGCGTCCAGGACCCGGATCATCATCATCTC 139852 || ||| |||||||| || | |||||| || |||| ||||| |||||| ||| Sbjct 1263 CTGGAACTTCGGCAGGC--GATG-GCGCATCTCGGCCAGCACCCGCGACATCATTGCCTC 1207 Query 139853 GCGGTTGATCCGCGCGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATTC 139912 |||||| ||| ||| ||||||| |||| | || ||||| |||||||| | ||| Sbjct 1206 GCGGTTCTGCCGGGCGTAGTCCTGCGCCCACGACACCGCTTCAACGTAGTCATCGAACAG 1147 Query 139913 CGGCTCGCCTTCCGACAGCCACGCGAGGTCCTTGTCGAGCGGCTTCTGACCGTCCCGACG 139972 ||||||||||||| | |||| ||||||||||| || | | ||| | || Sbjct 1146 CGGCTCGCCTTCCATGAAGAACGCCAGGTCCTTGTCCGGCAGGTGGAAGCCGAGCACGCG 1087 Query 139973 CAGCATCATCTCCTTG---GCCTTCTCGATGAAGATACG-GCCGATGGTGTTGCCGACGC 140028 | | || |||| | ||||||||||||||| || | |||||| ||||||| || Sbjct 1086 CCGGGCCAGTTCCTCGCGCGCCTTCTCGATGAAG-TAGGTGCCGATCAGGTTGCCGGTGC 1028 Query 140029 CGCGCGAGCCCGAGTGGAGCATCACCCAGAC-GCGCTGGTCCTCGTCGAGGCAGACCTCG 140087 |||| || || ||| ||||||||||| || | | ||| ||||| ||||| | ||| Sbjct 1027 CGCGTGATCCGCTGTGCAGCATCACCCACACCGTGTCCGTC-TCGTCCAGGCACAGTTCG 969 Query 140088 ATGAAGTGGTTGCCGCCGCCCAGCGTGCCCAGTTGGACGACGCTGTTGGCGTTCTTGAGG 140147 |||||||||||||||||||||||||| ||||| ||| | | ||| || | || Sbjct 968 ATGAAGTGGTTGCCGCCGCCCAGCGTACCCAGCTGGCGGTCCAGCTTGTCGGTGCGGATT 909 Query 140148 GTCTTGTACTTGTCGCAGAGCTTCTCGAACCGGGCTTCCAGGCCCGAGTCGACCCACTTG 140207 | || |||||| || |||||| | | ||| |||| || || | ||| | | Sbjct 908 CTGCGGTGCTTGTCCTTGATCTTCTCCAGACCGGCGGCCAGCCCGGACTGCACCAGCC-G 850 Query 140208 CGCATGATCGAGTTCGGG-ATGCCGCTACGCCCGTTCCAGCCGCCCGACGGACCCGGCCC 140266 || ||| | ||||| |||| | || || ||| || ||| Sbjct 849 CGTATGGATGCTGTCGGGCATGCGGTGGTGCTCG----------CCGCCGCGTCCGTT-- 802 Query 140267 GCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGCAGCTTGGCG-AGGCTGTCGGGCAGGT 140325 |||| ||||| | | ||||||| |||||||| | || ||| |||||||||| Sbjct 801 GCCGACCGGGATGCTGCGCTCGATGCTGTTGCGCAGCT-GCCGCAGGTCATCGGGCAGGT 743 Query 140326 CCGAGGCCTTCAGCGAGGTGCGCACGGCCATCATGCCGCAGCCGATGTCCACGCCCACGG 140385 | ||| ||||| |||||||| || |||||||||||||||||| ||||| || | Sbjct 742 CGTTGGCGCGCAGCGTAGTGCGCACCGCGGCCATGCCGCAGCCGATGTCGACGCCGACCG 683 Query 140386 CCGCCGGGATGATGGCGCCCTTGGTCGGGATCACCGAGCCCACGGTCGAGCCGATGCCCA 140445 | ||||||||||| ||||||| ||||||||||||||||||||||||| ||| |||||| Sbjct 682 CGGCCGGGATGATCGCGCCCTGCGTCGGGATCACCGAGCCCACGGTCGCGCCCTTGCCCA 623 Query 140446 TGTGGACGTCCGGCATCAGGGCCACATGCGAGTGGATGAACGGCAGGGCGGCGAGGTTGT 140505 ||| ||||||||||||| |||||| || || |||||| | ||||||| |||| Sbjct 622 GGTGCACGTCCGGCATCACGGCCACCCACGGCCCGACGAACGGGATCGCGGCGATGTTGC 563 Query 140506 GCGCCTGCACCTGGGCGGGCTGCTCGAAGGTCACACCCCGGACCCAGGCCTTGATC 140561 || |||| | || || || || | | |||||| ||||||| |||||||| Sbjct 562 GCAGCTGCTCATGCGCCTGCGCTTCCAGCGGCACACCGTTGACCCAGCCCTTGATC 507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715746930547200