Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq2875 306 5e-78 >seq2875 Length=2430 Score = 306 bits (338), Expect = 5e-78 Identities = 649/943 (69%), Gaps = 48/943 (5%) Strand=Plus/Minus Query 137306 TCGTCGATCACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCC 137365 ||||| | ||||||| |||||||||||| |||||| | |||| || | | || | Sbjct 1574 TCGTCCAGCACGCCGCTGTCCTTGCGGCATTCCACGTGCGCGGTTGCTTCGCGATGCTGG 1515 Query 137366 TCCAGAGTGAAGGTCGCCTTGGCCTGGGT-CCGCGAC--ATCGTCCGGCCCGCGCCGTGC 137422 |||| |||| || || | | ||| || || | ||| |||||| || || || Sbjct 1514 GCCAGCGTGA---TCTGCTGGCGCGCGGTGCCACGGCTCATCACCCGGCCGGCACCATGG 1458 Query 137423 GAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--C 137480 ||| | ||| |||||| ||||||||||| |||||||||||| || || | Sbjct 1457 CTGCAGCTGTGGAAGCTGTCCGCGTTGCCCTTGCCACGCACGATGTAG--CTGCGCGTGC 1400 Query 137481 CCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGG 137540 |||| |||||| ||||| || | || | ||| |||| ||||| |||||||| | Sbjct 1399 CCATGCTGCCGGGAATGATGCCCAGCTCGCCCTCGCGCGCACTGACCGCACCCTTGCGCG 1340 Query 137541 TCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCA 137600 |||| | | | || |||| ||| |||||||| ||||||||||| |||||||||| Sbjct 1339 TCACCAGCAGCTCCTGGTCGTGGTGCGTCTCCTTCTGCACGTAGTTGTGATGGCAGTTCA 1280 Query 137601 CCGCT-TCCTTGTCCGTCTTGAACGGCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACC 137659 |||| || || | | || |||| |||||||| || | | |||| | |||| ||| Sbjct 1279 CCGCCATCGCTGCCAG-CTGGAACTTCGGCAGGC--GATGGC-GCATCTCGGCCAGCACC 1224 Query 137660 CGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCC 137719 || |||||| ||||||||| ||| ||| ||||||| |||| | || ||||| Sbjct 1223 CGCGACATCATTGCCTCGCGGTTCTGCCGGGCGTAGTCCTGCGCCCACGACACCGCTTCA 1164 Query 137720 ACGTAGTCGTGGAACTCCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGC 137779 |||||||| | |||| |||||||||||| || | || |||||||||||| || | Sbjct 1163 ACGTAGTCATCGAACAGCGGCTCGCCTTCCATGAAGAACGCCAGGTCCTTGTCCGGCAGG 1104 Query 137780 TTGCGCCCGT-CACGGCGCAGCATCATCTCCTTG---GCCTTCTCGATGAAGATGCGGCC 137835 | | ||| |||| ||| | || |||| | ||||||||||||||| | ||| Sbjct 1103 TGGAAGCCGAGCACG-CGCCGGGCCAGTTCCTCGCGCGCCTTCTCGATGAAGTAGGTGCC 1045 Query 137836 GATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGATC--C 137893 ||| ||||||| |||||| || || ||| ||||||||||| || || || | | Sbjct 1044 GATCAGGTTGCCGGTGCCGCGTGATCCGCTGTGCAGCATCACCCACAC-CG-TGTCCGTC 987 Query 137894 TCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTT---GGACC 137950 ||||| ||||| | |||||||||||||||||||||||||| || ||||| | || || Sbjct 986 TCGTCCAGGCACAGTTCGATGAAGTGGTTGCCGCCGCCCAGCGTACCCAGCTGGCGGTCC 927 Query 137951 ACGCTGTTGGCG-TTCTTCAGCGCCGGGTACTTCTCGCAGAGCTTGTCGA-ACCGCGCCT 138008 | ||| || | ||| || ||| ||| || || ||| || | |||| || Sbjct 926 AGCTTGTCGGTGCGGATTCTGC----GGTGCTTGTCCTTGATCTTCTCCAGACCG-GCGG 872 Query 138009 CCAGGCCCGAATCGACCCACTTGCGCA-GGATCGAGTTGGGGATGCCGCTGCGCCCGTTC 138067 ||| ||||| | | ||| ||| | |||| || ||| |||| | | || || Sbjct 871 CCA-GCCCGGACTGCACCAGCCGCGTATGGATGCTGTCGGGCATGCGGTGGTGCTCG--- 816 Query 138068 CAGCCGCCCGACGGACCCGGCCCGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGC 138127 | ||||| | || |||| ||||| | | ||||||| ||| ||| Sbjct 815 CCGCCGC------GTCC---GTTGCCGACCGGGATGCTGCGCTCGATGCTGTTGCGCAGC 765 Query 138128 TTGGACAGGCTGTCGGGGAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCG 138187 | |||| ||||| ||||| ||| ||| | ||||| ||||| ||||||| Sbjct 764 TGCCGCAGGTCATCGGGCAGGTCGTTGGCGCGCAGCGTAGTGCGCACCGCGGCCATGCCG 705 Query 138188 CAGCCGATGTCGACGCCGACGGCGGCCGGGATGATCGCGCCCT 138230 |||||||||||||||||||| |||||||||||||||||||||| Sbjct 704 CAGCCGATGTCGACGCCGACCGCGGCCGGGATGATCGCGCCCT 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709692776431520