Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq2875 306 5e-78 >seq2875 Length=2430 Score = 306 bits (338), Expect = 5e-78 Identities = 645/935 (69%), Gaps = 48/935 (5%) Strand=Plus/Minus Query 136078 CACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGT 136137 ||||||| |||||||||||| |||||| | |||| || | | || | |||| || Sbjct 1566 CACGCCGCTGTCCTTGCGGCATTCCACGTGCGCGGTTGCTTCGCGATGCTGGGCCAGCGT 1507 Query 136138 GAAGGTCGCCTTGGCCTGGGT-CCGCGAC--ATCGTCCGGCCCGCGCCGTGCGAGCACGA 136194 || || || | | ||| || || | ||| |||||| || || || ||| Sbjct 1506 GA---TCTGCTGGCGCGCGGTGCCACGGCTCATCACCCGGCCGGCACCATGGCTGCAGCT 1450 Query 136195 GCAGAACGAGTCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--CCCATCGAG 136252 | ||| |||||||||||||||||| |||||||||||| || || ||||| | Sbjct 1449 GTGGAAGCTGTCCGCGTTGCCCTTGCCACGCACGATGTAG--CTGCGCGTGCCCATGCTG 1392 Query 136253 CCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAG 136312 ||||| ||||| || | || | ||| |||| ||||| |||||||| ||||| | Sbjct 1391 CCGGGAATGATGCCCAGCTCGCCCTCGCGCGCACTGACCGCACCCTTGCGCGTCACCAGC 1332 Query 136313 ACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCG-CTTC 136371 | | || |||| ||| |||||||| ||||||||||| ||||||||||||| | || Sbjct 1331 AGCTCCTGGTCGTGGTGCGTCTCCTTCTGCACGTAGTTGTGATGGCAGTTCACCGCCATC 1272 Query 136372 CTTGTCCGTCTTGAACGGCGGCAGGCCCGACGCTCGCATGGCCTCCAGGACCCGGACCAT 136431 || || || |||| ||||||| ||| | ||||| | |||| ||||| ||| Sbjct 1271 GCTG-CCAGCTGGAACTTCGGCAGG--CGATG-GCGCATCTCGGCCAGCACCCGCGACAT 1216 Query 136432 CATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTC 136491 ||| ||||||||| ||| ||| ||||||| |||| | || ||||| |||||||| Sbjct 1215 CATTGCCTCGCGGTTCTGCCGGGCGTAGTCCTGCGCCCACGACACCGCTTCAACGTAGTC 1156 Query 136492 GTGGAACTCCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGC-GGCTTACGCC 136550 | |||| |||||||||||| || | || |||||||||||| || || | ||| Sbjct 1155 ATCGAACAGCGGCTCGCCTTCCATGAAGAACGCCAGGTCCTTGTCCGGCAGGTGGAAGCC 1096 Query 136551 CGTCACGGCGCAGCATCATCTCCTTG---GCCTTCTCGATGAAGATGCGGCCGATGGTGT 136607 ||| |||| | || |||| | ||||||||||||||| | |||||| || Sbjct 1095 GAGCAC-GCGCCGGGCCAGTTCCTCGCGCGCCTTCTCGATGAAGTAGGTGCCGATCAGGT 1037 Query 136608 TGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGA-CGCGCTGGTCCTCGTCGAGG 136666 ||||| |||||| || || ||| ||||||||||| | || | || |||||| ||| Sbjct 1036 TGCCGGTGCCGCGTGATCCGCTGTGCAGCATCACCCACACCGTGTCCGT-CTCGTCCAGG 978 Query 136667 CAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTT---GGACCACGCTGTTG 136723 || | |||||||||||||||||||||||||| || ||||| | || ||| ||| | Sbjct 977 CACAGTTCGATGAAGTGGTTGCCGCCGCCCAGCGTACCCAGCTGGCGGTCCAGCTTGTCG 918 Query 136724 GCG-TTCTTCAGCGCCGGGTACTTCTCGCAGAGCTTGTCGA-ACCGCGCCTCCAGGCCCG 136781 | | ||| || ||| ||| || || ||| || | |||| || |||| || | Sbjct 917 GTGCGGATTCTGC----GGTGCTTGTCCTTGATCTTCTCCAGACCG-GCGGCCAGCCCGG 863 Query 136782 AGTCGACCCACTTGCGCA-GGATCGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCCC 136840 | | | ||| ||| | |||| || ||| |||| | | || || | ||||| Sbjct 862 ACT-GCACCAGCCGCGTATGGATGCTGTCGGGCATGCGGTGGTGCTCG---CCGCCGC-- 809 Query 136841 GACGGACCCGGCCCGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGCG-AG 136899 | || |||| ||||| | | ||||||| ||| ||| || || || Sbjct 808 ----GTCC---GTTGCCGACCGGGATGCTGCGCTCGATGCTGTTGCGCAGC-TGCCGCAG 757 Query 136900 GCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGAT 136959 | ||||| ||||| ||| ||| | ||||| ||||| ||||||||||||||| Sbjct 756 GTCATCGGGCAGGTCGTTGGCGCGCAGCGTAGTGCGCACCGCGGCCATGCCGCAGCCGAT 697 Query 136960 GTCGACGCCGACGGCGGCCGGGATGATCGCGCCCT 136994 |||||||||||| |||||||||||||||||||||| Sbjct 696 GTCGACGCCGACCGCGGCCGGGATGATCGCGCCCT 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701334715887040