Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_019490.1 Length=49329 Score E Sequences producing significant alignments: (Bits) Value seq531 239 1e-58 >seq531 Length=8657 Score = 239 bits (264), Expect = 1e-58 Identities = 393/559 (70%), Gaps = 12/559 (2%) Strand=Plus/Plus Query 11903 CCAATCTTATTGAGCATTCGTTCAAAAGCATCTTCTAAATTTGATACCTGCCCAGATAA- 11961 || || ||||||||||| | || |||| ||| | | |||| ||| | |||||||| Sbjct 224 CCTATTTTATTGAGCATCTGGTCCCAAGCGTCTCCAAGGTTTGCTACTTTTCCAGATAAT 283 Query 11962 -AACCTTAGATTGCTCCTCCATTATATTAAAGAATAACCCTCCTTCATCGGTCATATTTT 12020 || | ||| || ||||||||| ||| ||||| | |||||||| | || | |||| Sbjct 284 GAAGC--AGACTGTGCCTCCATTAAATTGAAGAACATTCCTCCTTCGTTAGTAAGGTTTT 341 Query 12021 TGATAACGGCTTGTACTTCTGGAAAACCTATTTTTCCTGCAGAAACCATATCTTTAATCT 12080 ||| || ||| | |||| ||| |||| ||||| || ||| | ||||| | Sbjct 342 GGATTACCTGTTGAATTTCTTTAAATCCTACCTTTCCAGCTCCAACAAGGTCTTTTACAG 401 Query 12081 CTGCTTCGCTT---TTACCTAACACTTTACCTAATTCGGAAAGAATAGGGATACCTGCAT 12137 ||| ||| || || | |||| || ||||||| | || ||||| ||||| | || Sbjct 402 CTGATTC-CTCAACTTTCATAACC--TTGGCTAATTCAGGAATGATAGGCATACCAGTAT 458 Query 12138 TCATAAACTGATACAGGTCATTAGTCATGATTTTGCCTTGTGCCTTTACTTGCCCATACA 12197 |||||||||| |||| |||||||||||| | | | ||||| || || || || ||||| | Sbjct 459 TCATAAACTGGTACAAGTCATTAGTCATTACTCTTCCTTGAGCTTTAACCTGACCATATA 518 Query 12198 CATGAATAAGTTGCCCCATAGGGACACCAAGACCCGCAGCAATATTCCCCATTCTTGTAA 12257 | |||||||| || | || || || || || ||||| | || || | |||||| | Sbjct 519 CGTGAATAAGCTGATCTATTGGAACCGATAGCCCGGCAGCTACGTTTCCTAATCTTGTTA 578 Query 12258 GGGTTTCTGTTACCTGTTCGGCAGGAACTTGAAATGCTAATAACCTTTTTGCCCCCTCTG 12317 || ||| |||| || | ||||||||||| ||||||| | ||| || || || |||| Sbjct 579 AAGTATCTATTACTTGATTAGCAGGAACTTGGAATGCTAGAAGCCTCTTGGCTCCTTCTG 638 Query 12318 TAACATC-GTTAAGACCGAAAGGCGTTTTGGCGGCTAAATCCACCATTTGCCCCATTAAC 12376 ||||||| | ||| |||||||| ||||| || ||||| || |||||| ||||||| Sbjct 639 TAACATCAGATAA-TCCGAAAGGAGTTTTTGCAGCTAAGTCAACCATTCTTTCCATTAAG 697 Query 12377 TCATTAGCCTTTTCCTTGCTTTTGAGCATTGTGGAAAAGGCAATTTCTGCCTTTTGGAAC 12436 | || || || ||| | ||| || | |||||| ||||||| |||||| || Sbjct 698 AATCTTGCTTTATCTGCGCTACCTAACATGGTAGTAAAGGCTATTTCTGTCTTTTGAAAT 757 Query 12437 TCGCCTCTAACATTTATTA 12455 || ||||| | ||| |||| Sbjct 758 TCACCTCTTATATTGATTA 776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157725114434558