Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 176 8e-39 >seq3 Length=15630833 Score = 176 bits (194), Expect = 8e-39 Identities = 233/321 (73%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || |||||||||||||| | |||||| ||||| ||||||| Sbjct 12047894 CCTGGCATCAGACCGCGCTTCTTGAGCCAGAAAATCGACGCGAACGAGCCGCTGAAGAAG 12047953 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 |||||||| || || ||||||||| |||||| ||| |||| || || || |||| || Sbjct 12047954 ATGCCCTCAACGGCAGCGAACGCGATGAGCCGCTCGGCGAACGATGCCTTGGTGTCGGAA 12048013 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCG-TCTC---TATGGC 48366 ||||| |||||||||||| ||||| ||||||||| || ||| ||| ||||| Sbjct 12048014 ATCCAACGAAGCGCCCAGTCGGCCTTTTTCTTGATGAAT----TCGAACTCGAAGATGGC 12048069 Query 48367 CCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426 ||| |||||| ||| ||| |||| | ||| || || ||||| | ||| Sbjct 12048070 GTTGAACAGCTTCATGCGCTCCTTCTCGTCGCGGATATACGTCTCGATGAGCTTCGAGTA 12048129 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||||| ||||| | ||||| || ||||| ||||| ||||||||| | |||||| | Sbjct 12048130 CATCTCCGAGTGTATGTTCTCGATGGCGATTTGGAATCCGTAGAAGAAGCGCGCCTCAGA 12048189 Query 48487 CACCTGCACTTCTGTGGAGAA 48507 |||| ||||| | ||||| Sbjct 12048190 GACCTTGACTTCGTTCGAGAA 12048210 Score = 136 bits (150), Expect = 7e-27 Identities = 390/595 (66%), Gaps = 11/595 (2%) Strand=Plus/Minus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCC--TCCTCTCGTCC 213878 |||||| || || || ||||| || || ||||| ||| | | | |||||| || Sbjct 10143189 CATGAAGAGATCTGGCACCCAGAGAGCCAAGAACAAGTCACGAGCACGTTCCTCT--TCT 10143132 Query 213879 ACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATG 213938 ||| | ||| || || ||| | | ||| || |||||||| || ||||| ||||||| | Sbjct 10143131 GGTCCGGTGTTCTTTCGAAGAGCAACAAACTCGAAGATGTCGGCATGCCATGGCTCCAAG 10143072 Query 213939 TAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATG 213995 |||||||| || || || || | |||| || || || || || | || || Sbjct 10143071 TAGATGGCGAATGCTCCTGGTCGCTTGTTGCCTCCTTGATCAACGTAACGAGCAGTGTTG 10143012 Query 213996 TTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATAC 214055 ||| ||| || || | |||| || || ||||| |||||||||||| || || Sbjct 10143011 TTGTAGACACGAAGCATTGGTATGAGTCCATTGGATGTTCCGTTGGTTCCGGCAATCACT 10142952 Query 214056 GAGCCGGAGGCCCTCAGGTTG--CTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGA 214113 || || | || | | ||| | ||| |||| || || || ||||| ||| |||| Sbjct 10142951 GAACCAGTTGCACGGATCTTGTGCACATTGAGA--CCGATTCCTCCGGCACTCTTTGAGA 10142894 Query 214114 TCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCA 214173 ||| ||||| || ||| ||| || ||| ||| || ||| || | | ||| Sbjct 10142893 TCAGAGCGCACTGCTTCAAAGTGTCGTAGATTCCGAGAATCGAGTCCTCGCTCATCGTCA 10142834 Query 214174 GCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGG 214233 ||||||||| || | ||| || | | | | |||||||||||||| || || | Sbjct 10142833 ACAAGAAGCATGAAGACATCTGTGGACGGCATGTTCCAGAGTTGAAAAGAGTTGGCGAAG 10142774 Query 214234 CATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGT 214293 |||| |||| || | || | | |||| ||||| | | | || ||||||| Sbjct 10142773 CATGTGTCATGTACCGCTCCGACATCAAGTTGTACGTCTCAATCGCCGCGGCAATGTCGT 10142714 Query 214294 GCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTT 214353 |||||| | ||| | ||||| ||| ||||| || ||||| | | | | | Sbjct 10142713 TTCCGTGGATTCCAATGGCGACACGCATCAACATCTGCTGTGGTCTCTCGACGACTTCCT 10142654 Query 214354 TGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTA 214408 || | |||||| ||||| || ||||| || |||||||| |||||||||| ||| Sbjct 10142653 TGTTGATCTTGAGAAGGTAAGAACGCTCGAGCGTCTTGAATCCAAAGTAGGTGTA 10142599 Score = 134 bits (148), Expect = 3e-26 Identities = 355/525 (68%), Gaps = 33/525 (6%) Strand=Plus/Minus Query 213119 CCACATGTCAAACTGCAAGATGCCT-TTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGG 213177 |||||| |||||||| ||| |||| ||| || || |||| ||||| ||||| | Sbjct 10144110 CCACATATCAAACTG-AAGTTGCCCCTTGGAAACTGGAGATCCCTCGTAAGTAGAGTATG 10144052 Query 213178 GGCCATGCTCCTTG-GCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCA 213236 | |||| ||| || |||| |||||| || | || ||||||||||||||||| || Sbjct 10144051 GTCCAT-CTCGTTCAGCCAACTCGCAACTGGCTTCCAACGCAGCGTAGTAGATGGTCTCG 10143993 Query 213237 AATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGG------GCATCATCATG 213290 || || | | ||||| | |||||| ||| || ||||| | |||||| ||| Sbjct 10143992 AAGATTCTCTTATTGAGATCTCTGGCCTGTGGAGAGGTGAATGGATAACGCATCAACAT- 10143934 Query 213291 CGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTA 213350 ||| |||||| || || ||||| |||| ||||| || | || | || ||| Sbjct 10143933 -----GAAGCAATCAGCGAGTCCTTGGACTCCGAGACCGATTGGACGATGGCGCATGTTC 10143879 Query 213351 GACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCG 213409 || ||| |||| ||| || | || || ||||| ||||| |||||||| || || Sbjct 10143878 GAGTTGCGAGC-CTCTTCAACTGGATAGTAGTTGACATCGATTATCTTGTTCAGATTCTT 10143820 Query 213410 GGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTG 213469 || || ||||| || | || || | | || |||| | | ||| Sbjct 10143819 TGTTATGACCTTGGTAACCTCAGCGAGCTTGACAAAATCGAACTTCTTG---TCGTTTGT 10143763 Query 213470 CAC-AAACTCAGG--CAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC--CTGAGAG 213524 ||| |||| || || || ||| || || |||||||| || ||||| ||| ||| Sbjct 10143762 CACGAAAC---GGTTCAAAGCAATGGATGCGAGATTGCAAACAGCAACCTCATCTG-GAG 10143707 Query 213525 TCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGG 213584 | | |||||| || ||||| ||||||| |||| ||| |||||| |||| |||||| Sbjct 10143706 -CAGAGTACTCGATAATCTCCGTGCACAAGTTGGAGCACTTGATGGTTCCCAAGTTCTGC 10143648 Query 213585 TGGTTTGACTTTGCG-TTGGCAGAATCCTTGTAGAGCATGTAGGG 213628 ||||| ||| ||||| ||||| | |||||||||| ||||| || Sbjct 10143647 TGGTTCGAC-TTGCGATTGGCGGCATCCTTGTAGGTGATGTATGG 10143604 Score = 120 bits (132), Expect = 6e-22 Identities = 329/502 (66%), Gaps = 19/502 (4%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| || | || |||| | |||||| || | |||||||| || ||||| Sbjct 10144700 ACAGTGAACTGAACGGCATTGACAGCTGGCTTGGTACGCAAGTAGTACATTCCAGTCTTG 10144641 Query 212613 AGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTC--AGCTTAATATTCT 212670 || ||||| ||| |||| | |||||||| |||| | | | ||||| Sbjct 10144640 AGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGA-TGGCGGCGTAGCTT-------- 10144590 Query 212671 GGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCC 212730 || | ||||| | || | ||| || || || || || ||||||| | | Sbjct 10144589 GG-------CTTGGCCATG-TGGATGTTGAGCGATTGGGATTGATCGATGAATGCTCCAC 10144538 Query 212731 TGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTT 212790 || || ||||| || || || || |||| |||| |||||| || || | | | || Sbjct 10144537 GATCGGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACAGTGAGGTAAAGTT 10144478 Query 212791 CTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCT 212850 | |||| ||| ||||| | || || || || || | || || ||| | | || Sbjct 10144477 CCTTGATGTCGTCTGGAATTCCTGGAATATTTTGGATGGATCCATTGTTGGCGATGAGAC 10144418 Query 212851 GCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGT 212910 | |||||| ||| ||| | || || |||| ||| | || ||| || | Sbjct 10144417 GATTCTTCATGTCATCGGACCACAATCCTCTCTCAACCAGATCCTTCAGCATGTGTGGAT 10144358 Query 212911 TGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCT 212970 |||| || ||||||||||| |||||||| | | ||| | ||| |||||||| |||| Sbjct 10144357 TGACGATTTGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTAGAAGTGTATGGCT 10144298 Query 212971 CGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCA 213030 | || |||||||| || || ||||| |||||| || || ||||| ||||||| | Sbjct 10144297 CAATCGATTCGTTGTTTCCAAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATGA 10144238 Query 213031 GGAGACTGTTCCTCACTCCGTG 213052 |||||||||| | || ||||| Sbjct 10144237 GGAGACTGTTGCGAACACCGTG 10144216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931494968124160