Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 120 6e-22 >seq3 Length=15630833 Score = 120 bits (132), Expect = 6e-22 Identities = 297/443 (67%), Gaps = 27/443 (6%) Strand=Plus/Minus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGCCTCGGGAGAAGT 221481 ||||||| |||||||||||| ||||| |||| ||||| |||| |||||| ||||| || Sbjct 10144013 GCAGCGTAGTAGATGGTCTCGAAGATTCTCTTATTGAGATCTC-TGGCCTGTGGAGAGGT 10143955 Query 221482 GAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGG 221541 ||| || ||||| || | ||| || || ||||| || ||||||| |||||| || Sbjct 10143954 GAATGGATAACGCATCAACATGAAGCAATCAGCGAGTCCTTGGACTCCGAGACCGATTGG 10143895 Query 221542 CCTGTGTCTCCTGTTGGA--AGCG-GCCGCTTCTGGCACGGGATAAAAGTTGACGTCGAT 221598 | || | | |||| || ||| ||| |||| || ||||| ||||||| ||||| Sbjct 10143894 ACGATGGCGCATGTTCGAGTTGCGAGCCTCTTC---AACTGGATAGTAGTTGACATCGAT 10143838 Query 221599 CAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAA 221658 | ||||| || ||| || ||||| || ||||| | ||||| Sbjct 10143837 TATCTTGTTCAGATTCTTTGTTATGACCTTGGTAACCTCAGCGAGCTT------------ 10143790 Query 221659 CACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 || || ||| | || | | | | ||| ||| ||| | |||| | || || Sbjct 10143789 GACAAAATCG--AACTTC-TTGTCGTTTGTCACGAAACGGTTCAAAGCAATGGATGCGAG 10143733 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTG--GTATACTGTATGATCTCTGTACAGAGGTTG 221776 || || || || ||||| || || | | |||| || ||||| || || | |||| Sbjct 10143732 ATTGCAAACAGCAACCTCATC--TGGAGCAGAGTACTCGATAATCTCCGTGCACAAGTTG 10143675 Query 221777 CTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAG 221836 |||||||||||| |||| || | || || |||||||||||||| || ||||||||| Sbjct 10143674 GAGCACTTGATGGTTCCCAAGTTCTGCTGGTTCGACTTGCGATTGGCGGCATCCTTGTAG 10143615 Query 221837 AGCATAAAGGGACCGCCAGTCTC 221859 || | ||| |||||||| Sbjct 10143614 GTGATGTATGGAAGTCCAGTCTC 10143592 Score = 111 bits (122), Expect = 3e-19 Identities = 458/705 (65%), Gaps = 22/705 (3%) Strand=Plus/Minus Query 221975 TCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTT-GAC 222033 || || || ||||| ||| | || ||||||| ||| | |||| | | ||| ||| Sbjct 10143254 TCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGACCAAT-CTTGATCTTTTTCGAC 10143196 Query 222034 CCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTC 222093 | | ||||||||| || || | ||| || ||| || | || | | || | ||| Sbjct 10143195 ACGTTTCATGAAGAGATCTGGCACCCAGAGAGCCAAGAACAAGTCACGAGCACGTTCCTC 10143136 Query 222094 CTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTC 222153 || ||| |||| || | ||| | | |||||| || ||||| || ||||| ||||| Sbjct 10143135 TTCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCGAAGATGTCGGCATGCCATGGCTC 10143076 Query 222154 CAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAG 222213 || |||| ||| | || || |||||||||||||| || |||| || | | ||| Sbjct 10143075 CAAGTAGATGGCGAATGCTCCTGGTCGCTTGTTGCCTCCTTGAT-CAACGTAACGAGCAG 10143017 Query 222214 AG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAA 222272 | |||| ||| ||||| | |||| ||||| |||||| |||||||| || || Sbjct 10143016 TGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTGGATGTTCCGTTGGTTCCGGCAA 10142957 Query 222273 TGTACGCACCGCCGGCCCTCAGGTTACTG-GCAGA--CATGCCGATACCACCGGCGTGTT 222329 | | ||| || | || | || ||| | | ||||| || ||||| | Sbjct 10142956 TCACTGAACCAGTTGCAC---GGATCTTGTGCACATTGAGACCGATTCCTCCGGCACTCT 10142900 Query 222330 TCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGA 222389 | ||||||| ||||| ||| | |||||| ||| || || |||||||| | | Sbjct 10142899 TTGAGATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTCCGAGAATCGAGTCCTCGCTCA 10142840 Query 222390 CGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGG 222449 ||| || || || || |||||||| | | | | | ||| || || || | Sbjct 10142839 TCGTCAACAAGAAGCATGAAGACATCTGTGGACGGCATGTTCCAGAGTTGAAAAGAGTTG 10142780 Query 222450 GACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTA-CGACTCTGGCG 222508 | || ||||| | ||| | | ||||||| | ||||||||| | || | | ||| Sbjct 10142779 GCGAAGCATGTGTCATGTACCGCTCCGACATCAAGTTGTACGTCTCAATCGCCGC-GGCA 10142721 Query 222509 ATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACA 222568 |||| || ||||| || |||||| | ||| |||| | ||| || ||||| || Sbjct 10142720 ATGTCGTTTCCGTGGATTCCAATGGCGACACGCATCAACATCTGCTGTGGTCTCTCGAC- 10142662 Query 222569 GGAC--CCTTG--GAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624 ||| ||||| || || |||| ||||| || || || |||||||| |||||||| Sbjct 10142661 -GACTTCCTTGTTGATCTTGAGA--AGGTAAGAACGCTCGAGCGTCTTGAATCCAAAGTA 10142605 Query 222625 GTTG-AGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCT 222668 | || | | || |||||| ||| || | ||||| || |||| Sbjct 10142604 GGTGTAAGAGTAA-TCTCTGTCGTAGACGATGGCGGAGTTGAGCT 10142561 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 ||| || || | ||| | || ||||| |||| |||| | |||||| || || | Sbjct 10144410 CATGTCATCGGACCACAATCCTCTCTCAACCAGATCCTTCAGCATGTGTGGATTGACGAT 10144351 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 |||||| || || |||||||| | | ||| | |||||||||| | || || || Sbjct 10144350 TTGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTAGAAGTGTATGGCTCAATCGA 10144291 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 |||||||| || ||||||||||| ||| || || ||||| || |||| || ||||| Sbjct 10144290 TTCGTTGTTTCCAAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATGAGGAGACT 10144231 Query 221245 GTTGCG 221250 |||||| Sbjct 10144230 GTTGCG 10144225 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 |||| | ||||||||| | || || ||||| || ||||||||||| |||||||| |||| Sbjct 12047996 CGTTCGCCGAGCGGCTCATCGCGTTCGCTGCCGTTGAGGGCATCTTCTTCAGCGGCTCGT 12047937 Query 25928 TTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987 | ||| | || |||||||||||| || || ||||| || || | |||||||| Sbjct 12047936 TCGCGTCGATTTTCTGGCTCAAGAAGCGCGGTCTGATGCCAGGATTGACCCATTCCAACG 12047877 Query 25988 AGCTCATC 25995 |||| ||| Sbjct 12047876 AGCTTATC 12047869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928807077290560