Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq1577 111 4e-20 >seq1577 Length=16492 Score = 111 bits (122), Expect = 4e-20 Identities = 338/518 (65%), Gaps = 32/518 (6%) Strand=Plus/Plus Query 3648 GACAACAGTATTTCTGTTTTTGATGTGATCGGGCAGGACTACTGGGGTGAAGGCGTAACA 3707 ||||||| ||||| || | ||| ||||| |||||| | || || ||||| || Sbjct 1102 GACAACACCATTTCCATTCTCGATCCAATCGGAGAGGACTGGTTTGGGGATGGCGTTACC 1161 Query 3708 GCCAAACGTATCGCCGGTGCGCTTCG-------GGCGATGAATGGCGCCGACGTCACGGT 3760 |||||||| || | | || || || ||| | ||| | || | ||| || | Sbjct 1162 GCCAAACGCATTTCTGCGGCTCTGCGAAACATCGGCAA-GAAAGACGTGGTCGTTTCGAT 1220 Query 3761 CAATATTAACTCCCCTGGCGGGGACATGTTCGAAGGCCTGGCCATCTACAACCTTCTGCG 3820 ||| ||| || || || || |||||||| ||||| ||||| ||||| || || Sbjct 1221 CAA------CTCGCCGGGTGGCGATTATTTCGAAGGGCTGGCGATCTATAACCTCCTTCG 1274 Query 3821 TGAATA-----CGAAGGCCGTGTGACTGTGAAGGTGCTCGGTATTGCCGCCAGCGCCGCC 3875 ||| | |||||| ||||||| ||| | | || ||||| || ||||| Sbjct 1275 CGAACATCCTGCGAAGG-----TGACTGTCAAGATCGTGGGCATTGCGGCTTCTGCCGCA 1329 Query 3876 TCGGTCATTGCGATGGCCGGGGATGAAATTCAGATCGGCCGTGGTGCCTTCCTGATGATC 3935 || ||||| || ||||||| || ||| | ||||||| |||| | ||| | |||||| Sbjct 1330 TCAGTCATCGCAATGGCCGCAGACGAAGTGCAGATCGCGCGTGCGGGTTTCATCATGATC 1389 Query 3936 CACAACTGCTGGGTCTACGCGATGGGTAACCGCCATG-ACTTTGCGGAACTGGCACAGTC 3994 ||||| ||||| ||| | || |||| |||| |||| | ||| | || | | Sbjct 1390 CACAATACGTGGGTTGTGGCGGTTGGCGACCGTCATGCACTTCG-GGATGTCGCTGACTG 1448 Query 3995 TCTTGAGCCGTTCGA---TACCGCTATGGCAGACATCTACGCGGCGCGTTCCGGCCTTGA 4051 |||||||||||||| || || | | || || || || || || | || || || Sbjct 1449 GCTTGAGCCGTTCGACGTGACTGCCA---CCGATATTTATGCAGCTCGCACTGGTCTCGA 1505 Query 4052 TATGGCAGCCGTTCAGAAACTGATGGACGCCGAGAGTTATATCGGTGGCAGTGACGCTGT 4111 | | || || | || | ||| || | | ||||||||| ||||||||| Sbjct 1506 TGAGAAAGAGATTGGGCGGATGCTTGACCGTGAAACGTGGATCGGTGGCGCTGACGCTGT 1565 Query 4112 GGCGAAGGGACTGGCAGACAGCCTGCTTTCTGCTGATG 4149 | || || | |||||||||||||| |||||||||| Sbjct 1566 CGATAAAGGTTTTGCAGACAGCCTGCTCTCTGCTGATG 1603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120177763137666