Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq2112 127 8e-25 >seq2112 Length=10038 Score = 127 bits (140), Expect = 8e-25 Identities = 226/326 (69%), Gaps = 23/326 (7%) Strand=Plus/Minus Query 9706 TCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGCTATCTCCCGA 9765 |||||||||||||||| |||||||| ||||| ||||||||| || || || Sbjct 9326 TCAACAAAGTCATCCTGGTCGGCAACCTCGGCAACGACCCGGACGTGAAGTACACCCAGA 9267 Query 9766 GCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGATCGTTA-CAAGGACAAAGCC 9824 ||||| || ||| || |||| |||| || || ||| | ||| ||||||||| | Sbjct 9266 GCGGCATGGCGATCACCCGCATCAGCCTGGCCACCACC-AGCGTCCGCAAGGACAAGGAT 9208 Query 9825 AGCGGCGACTTCAAAGAAGTGACCGAGTGGCACCGCGTCGCCTTCTTCGGCCGCCTCGCC 9884 ||| || | ||| ||||| ||||||||||| | ||||||||| |||| | Sbjct 9207 ---GGCAACCAGCAGGAACGTACCGAATGGCACCGCGTGGTGTTCTTCGGCAAGCTCGGC 9151 Query 9885 GAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCGGTCTACATCGAGGGGCGCATCAAA 9944 ||||||| || |||| |||||||||||||| ||||||||| |||| || || | Sbjct 9150 GAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGCAGCCT---- 9095 Query 9945 ACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGC---------TACACGACCGAGATC 9995 ||| | | || | || ||||||||||| || ||| | ||||| ||| Sbjct 9094 --GCGCTA-CGACAAGTACA--CCGGCCAGGATGGCGTGGAGAAGTACTCCACCGACATC 9040 Query 9996 GTCGCCGACAAGATGCAGATGCTCGG 10021 || ||||| | ||||||||||| || Sbjct 9039 GTTGCCGATGAAATGCAGATGCTGGG 9014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201313628230857