Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq1878 87.8 4e-13 >seq1878 Length=10347 Score = 87.8 bits (96), Expect = 4e-13 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 6142 CCACCACGCCGCAGCACTCGCGCGGGTATTCTGCCGCAGCATGCGTCAGAATGTCGGCAA 6201 |||| | ||| || |||||||||||||| || ||| ||||| | | ||| || ||| Sbjct 7606 CCACTAGGCCACAACACTCGCGCGGGTACTCCGCCATCGCATGAGCACGGATGGCGTCAA 7547 Query 6202 TGGTTTTATCGCGCATGGTTACCTCCGGATCAGGCTGGCGCCGGGAAAGCCGCCGAAATC 6261 | || || | |||||||||||| || || || || || |||||||| |||| Sbjct 7546 TCGTCTTCTTTCGCATGGTTACCCTCGAATGCGGTCCGCAGAAGGGAAGCCGCCAAAATT 7487 Query 6262 GAGCCGGGCATCCGAACCAAAGCGTTTTTTACAGTCGGTCAGCAGGCCCGAGCATTTATC 6321 | | | | | || ||||| | || |||||| |||||| || || ||| ||| Sbjct 7486 AATCACCTCGTACTCGCCGAAGCGCTGCTTGCAGTCGCTCAGCAACCCAGAACATCGATC 7427 Query 6322 CTGTGCCGGGTCGGTCACCGGGTTACCTTTCAGATCAAACATGCGCGGGCC 6372 | || ||||||| || || || |||| || ||| |||||||| | ||| Sbjct 7426 GCGCGCTGGGTCGGAAACGGGATTCCCTTCCACATCGAACATGCGAGAGCC 7376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124711988192012