Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_020205.1 Length=42963 Score E Sequences producing significant alignments: (Bits) Value seq2112 159 1e-34 seq1391 82.4 2e-11 >seq2112 Length=10038 Score = 159 bits (176), Expect = 1e-34 Identities = 221/308 (72%), Gaps = 11/308 (4%) Strand=Plus/Plus Query 34835 CGGGCGTCCAGCATCTTCATCTGATCGCAGGCGATGTCGGTGGTGTAGTGCGTCACGCCT 34894 ||| || ||||||||| ||| | |||| |||||||||||| ||| | | |||||| Sbjct 9008 CGGCCGCCCAGCATCTGCATTTCATCGGCAACGATGTCGGTGGAGTACTTCTCCACGCCA 9067 Query 34895 TCCTTTTCG---TACTTGCCGTAACGGATCATGCCCGCCACCGCGATCTTCGAACCCTTG 34951 |||| || |||||| |||| || | |||| | || || | |||||| Sbjct 9068 TCCTGGCCGGTGTACTTGTCGTAGCGCAGGCTGCCTTCGACGTAGACCGAGCTGCCCTTG 9127 Query 34952 CGCAAGTATTCGCCGGCAATCTCGGCCAGCTTCCCGAAGAACACCACCCGGTGCCACTGG 35011 |||| ||| |||||||| |||||| | ||||| |||||||||||||| |||||||| | | Sbjct 9128 CGCAGGTACTCGCCGGCGATCTCGCCGAGCTTGCCGAAGAACACCACGCGGTGCCATTCG 9187 Query 35012 GTTTCTTCGACCTGGTTGCCCTCGCGGTCTTTCCGCTTCGAC----GTGGTGGCGATGGA 35067 || ||| ||||||||| || ||| || || ||| |||||||| | | Sbjct 9188 GTACGTTCCTGCTGGTTGCCATCCTTGTCCTTGCG----GACGCTGGTGGTGGCCAGGCT 9243 Query 35068 AATGCGGGTGATGGCCATGCCGCCCTGCGTGTAAGTCACCTTCGGGTCATCCCCCAGGTT 35127 ||||||||||| |||||||||| ||| ||||| |||| | |||||| | || ||||| Sbjct 9244 GATGCGGGTGATCGCCATGCCGCTCTGGGTGTACTTCACGTCCGGGTCGTTGCCGAGGTT 9303 Query 35128 CCCGATCA 35135 |||| || Sbjct 9304 GCCGACCA 9311 >seq1391 Length=31949 Score = 82.4 bits (90), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 29376 TGGCGAATTCGTGTGGGATGCGAAGGGCAGTCGCATCATCCGCGTGGGCGACCCGACTGG 29435 |||||| | || |||||||| ||||| || |||||||| || || ||| ||||| Sbjct 4170 TGGCGAGCTTGTATGGGATGCAAAGGGATCGCGAATCATCCGTGTAGGTGACGCGACTAA 4111 Query 29436 CGATCAGGACGCTGTGAACCTGCGCACCCTGTACCTGGTC---ATCGAACAGATCCAGAA 29492 ||| |||||| | ||| |||| | | || |||| ||||||||||| || Sbjct 4110 TGATGCTGACGCTCTTAACAAGCGCTCG--GCAC-TGGTACTGATCGAACAGATTCAAGG 4054 Query 29493 CGGCGGCGGCTCGGTCGGCGTCAGCCCGAAATACTGGGAAATCACGGGCGACGGCGAGGA 29552 |||||||| | || ||||||| ||||| | ||||| | ||||||||||| | Sbjct 4053 TGGCGGCGGGACCGTAGGCGTCACTCCGAAGTTCTGGGCGTTTGAGGGCGACGGCGTCGT 3994 Query 29553 TACCGACTTCGAACTGCCCGGCTCCGACGT 29582 || |||||| |||||||| |||| || Sbjct 3993 GACGGACTTCCCCTTGCCCGGCGCCGATGT 3964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137354700393650