Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 1e-15 >seq2 Length=17838644 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| || || || || ||||| || ||||| |||||||||||||||||||| || Sbjct 9974097 ACTCCAATTGGTCCAACTCCTGGACCACCTCCTCCGTGTGGAATACAGAATGTCTTGTGC 9974156 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 || || ||||| | ||||| ||| || || | ||| | || || || ||| Sbjct 9974157 AAGTTGAGATGTGACACATCACTACCGTAATCTCCTGGACGACACAATCCGACTTGAGCA 9974216 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | ||| || ||||| | ||| || ||||| || | |||||||| | | ||| | Sbjct 9974217 TTCATATTGGCTCCATCCAAATAAACTTGACCTCCGTGCTCATGAACCTTGTCACAAACA 9974276 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATA 138416 | | || || ||| || || || || || |||||||| || | ||| ||| Sbjct 9974277 TCACGAATTGATGATTCGAAGACTCCGTGTGTAGATGGATAGGTGACCATGATA 9974330 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 ||||| ||| ||||||| | | |||||||||| || || || ||||| || || |||||| Sbjct 9975609 CCATGGTATACTGCATACATTGCAGACATATTGGCCAGAAGGGCTTGGGCGGTACAGATG 9975668 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGC 139381 |||||||| |||||||| | | |||||| || || | |||||| || || Sbjct 9975669 TTACTGGTGGCTTTGTCACGACGAATATGTTGTTCACGAGTTTGGAGAGC 9975718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578974885427480