Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2098 100 4e-16 seq4 87.8 2e-12 >seq2098 Length=9782 Score = 100 bits (110), Expect = 4e-16 Identities = 247/375 (66%), Gaps = 0/375 (0%) Strand=Plus/Minus Query 47944 GTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATA 48003 || ||||| || || || || || || || || | || ||||| || || || || || Sbjct 4472 GTGATCTTGCGCGTGACGAAGGTCTCGCCGCGCTTGGGCGATTCGTGGTTGAACAGGATG 4413 Query 48004 CCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAG 48063 || | ||||||||||| || || | ||| || || ||| |||||||| | || Sbjct 4412 CCGTTGCAGGCATACATGCCATAGGCTTCGCGGTAATTCACGCTGATCCAGTAGGCGTAC 4353 Query 48064 AGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTC 48123 || || || | |||| || || |||||||| || ||||| || | || || ||| Sbjct 4352 AGCTTGGCCGCCGCATACGGGCTGCGCGGATAGAACGGCGTGGTTTCCTTTTGCGGCGTC 4293 Query 48124 TCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCC 48183 ||||||||| ||||| || || |||||| || || |||| || || | | ||| Sbjct 4292 TCTTGCACCAGGCCATACAGCTCGGAGGTGGAGGCCTGGTAGAAGCGGGCCTTGTTCTCC 4233 Query 48184 ATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCA 48243 | | || | |||| || || || | | ||||||||| | | | || | | | Sbjct 4232 AGTTTCAGGATGCGGATGGCTTCCAGGAGACGCAGGGTGCCCAGGCCGTCGGCGTTGGCC 4173 Query 48244 GTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATC 48303 || || ||||| ||| ||||| || ||||| || || || | || || || ||| Sbjct 4172 GTGTATTCGGGTTCCTCGAACGAGACGCCGACATGGCTTTGGGCGGCCAGGTTGTAGATC 4113 Query 48304 TCATCTGGTTGAACC 48318 || || || || ||| Sbjct 4112 TCGTCGGGCTGCACC 4098 >seq4 Length=19682253 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 47986 TCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTT 48045 |||||||| || ||||| ||| | || || ||||| || | || || ||||| Sbjct 5497149 TCATGATTGAAGAGAATTCCATTGCATGCGAACATTTTATAAGCCTCGCGGTAGTTGACA 5497208 Query 48046 ACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTG 48105 || |||||||||||||| | || || ||| | || ||||| | ||||||||| || || Sbjct 5497209 ACAATCCAGTACCCATACATCTTAGCGACAGCGTATGGAGATCTTGGATAGAATGGAGTC 5497268 Query 48106 GTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAG 48165 | || | |||||| ||||||| || || || || | || || || ||||| ||| Sbjct 5497269 TTTTCACTTTGTGGAATCTCTTGTACTTTTCCGTACAACTCGGAAGTCGACGCTTGGTAG 5497328 Query 48166 ATACGAAC 48173 | ||| || Sbjct 5497329 AAACGGAC 5497336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665467372608680