Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3 122 1e-22 seq2098 84.2 3e-11 seq1 82.4 9e-11 >seq3 Length=15630833 Score = 122 bits (134), Expect = 1e-22 Identities = 674/1077 (63%), Gaps = 65/1077 (6%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 ||||||||| ||||| || ||||||||||| || ||| ||||| || Sbjct 10143592 GAGACTGGACTTCCATACATCACCTACAAGGATGCCGCCAATCGCAAGTCGAACCAGCAG 10143651 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 || |||||||| |||||| |||| || | |||||||| ||| | |||||| | | | Sbjct 10143652 AACTTGGGAACCATCAAGTGCTCCAACTTGTGCACGGAGATTATCGAGTACTCTGCTCCA 10143711 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTAT-GTCAATGAAGA 76083 |||||| |||||||||||| | ||||| || | | || | || | || | || Sbjct 10143712 GATGAGGTTGCTGTTTGCAATCTCGCATCCATTG-CTTTGAACCGTTTCGTGA--CAAAC 10143768 Query 76084 GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 ||| | | || |||| || || || ||| | || ||| | | || || ||||| Sbjct 10143769 GACAAG-AAGTTCGATTTTGTCAAGCTCGCTGAGGTTACCAAGGTCATAACAAAGAATCT 10143827 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCG 76203 ||| | || || || | ||||| ||||| || || || || || ||||| Sbjct 10143828 GAACAAGATAATCGATGTCAACTACTATCCAGTTGAAGAGGCTCGCAACTCGAACATGCG 10143887 Query 76204 ACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTA 76263 || | || || ||| | || || ||||| ||||| ||| || || ||| || || Sbjct 10143888 CCATCGTCCAATCGGTCTCGGAGTCCAAGGACTCGCTGATTGCTTCATGTTGATGCGTTA 10143947 Query 76264 CGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCA 76323 |||| || | |||| || | ||| | ||||| || ||||| || | Sbjct 10143948 TCCATTCACCTCTCCACAGGCCAGAGATCTCAATAAGAGAATCTTCGAGACCATCTACTA 10144007 Query 76324 CGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383 ||| | |||| || ||||| || ||||||||| | || | || || | || Sbjct 10144008 CGCTGCGTTGGAAGCCAGTTGCGAGTTGGCTGAACGAGATGGACCATACTCTACTTACGA 10144067 Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT 76443 ||| ||||| | ||| | ||| ||||||||||||||||||| | || | || | || Sbjct 10144068 GGGATCTCCAGTTTCCAAGGGGCAACTTCAGTTTGATATGTGGGGA-GTTACTCCGA-CT 10144125 Query 76444 CA--ACTACGACTGGGATG---TTCTCAAGGAACGCATCAAG-GAGA------------- 76484 | | | | ||||||| | ||| |||| || | |||| |||| Sbjct 10144126 AATCAATGCAACTGGGACGAGCTTCGCAAGAAAATCGCCAAGTGAGATTTGAAAATTCAG 10144185 Query 76485 -------------------------------AGGGTCTTCGTAACAGTCTTTTGATGGCA 76513 | ||| |||| |||||||| | ||||| Sbjct 10144186 AGTATTCAAAATATTATATTTTCTTTCAGACACGGTGTTCGCAACAGTCTCCTCATGGCT 10144245 Query 76514 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATAC 76573 ||||||||||| || ||||| || || ||| | || || || |||| |||| |||||| Sbjct 10144246 CCAATGCCAACTGCTTCCACTGCTCAGATCCTTGGAAACAACGAATCGATTGAGCCATAC 10144305 Query 76574 ACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCAC 76633 || | ||||||||| | | ||| | ||||| || || ||||| ||| Sbjct 10144306 ACTTCTAACATCTACTCTCGTCGTGTGCTCTCCGGTGACTTCCAAATCGTCAATCCACAC 10144365 Query 76634 CTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCATG 76690 | | || || || ||| || | |||||| | || |||||| | |||||| Sbjct 10144366 ATGCTGAAGGATCTGGTTGAGAGAGGATTGTGGTCCGATGACATGAAGAATCGTCTCATC 10144425 Query 76691 GTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTC 76750 | || ||| ||||| |||||||| ||| || ||||| || |||||| | || Sbjct 10144426 GCCAA---CAATGGATCCATCCAAAATATTCCAGGAATTCCAGACGACATCAAGGAACTT 10144482 Query 76751 TACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGT 76810 |||| ||| || ||||| ||| ||| || | || || ||||| || |||||||| Sbjct 10144483 TACCTCACTGTCTGGGAGATCTCACAGAAGGAGATTATCGAGATGGCTGCCGATCGTGGA 10144542 Query 76811 CGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGG-AAAGTCCAACGATGTCCAA 76869 ||||| |||||| ||| | || | ||||| ||| | | | | | || Sbjct 10144543 GCATTCATCGATCAATCCCAATCGCTCAACATCCACATGGCCAAGCCAAGCTACG-CCGC 10144601 Query 76870 GCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTA 76926 || | || ||||| | |||| ||||| |||| ||||| || ||||||||||| Sbjct 10144602 CATCACCTCAATGCACTTCTACGGATGGAAGAAGGGACTCAAGACTGGAATGTACTA 10144658 >seq2098 Length=9782 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 177781 GGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAA 177840 || |||||||||||||| ||||| ||| |||||||||||| ||||||| ||| |||||| Sbjct 4436 GGCGATTCGTGGTTGAACAGGATGCCGTTGCAGGCATACATGCCATAGGCTTCGCGGTAA 4377 Query 177841 TTTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGG--ATCGTGGGTAGA 177898 || | || ||||| ||| || ||| | |||| | |||| || || |||| Sbjct 4376 TTCACGCTGATCCAGTAGGCGTACAGCTTG--GCCGCCGCATACGGGCTGCGCGGATAGA 4319 Query 177899 AGGGTGTCTCCTCAGTTTGTGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGG 177958 | || || || |||| || || ||| | || ||| ||| ||| || || |||| Sbjct 4318 ACGGCGTGGTTTCCTTTTGCGGCGTCTCTTGCACCAGGCCATACAGCTCGGAGGTGGAGG 4259 Query 177959 CTTGGTA 177965 | ||||| Sbjct 4258 CCTGGTA 4252 >seq1 Length=16658584 Score = 82.4 bits (90), Expect = 9e-11 Identities = 123/173 (71%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 27861 CTCAAGGACAAGTTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCCGTG 27920 |||| ||| || ||||| || | || || ||||| ||||| ||||| || | || Sbjct 6116420 CTCACAGACGAGCTGTGCAATTCTGTCACCCTTCTTGACCTCGAAGTCA--GTATTGTTG 6116477 Query 27921 A--TTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGATCAATAACACCCGCACCA 27978 | ||||| |||| ||| |||| || || || || ||||| |||||| || ||| Sbjct 6116478 AAGTTGAAAAGAAGGACCTTGATCTCTCCACGGTAATCACTATCAACAACACCAGCCCCA 6116537 Query 27979 ACTTGAATACCATGCTTCACAGCGAGACCGGATCGTGGTGCAACACGACCATA 28031 || | ||| |||||| | ||||||||||||||||| ||||| | ||||| Sbjct 6116538 ACATCAATGAAATGCTTGGCTGCGAGACCGGATCGTGGAGCAACTCTTCCATA 6116590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596545371817120