Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_020871.1 Length=133057 Score E Sequences producing significant alignments: (Bits) Value seq1741 291 7e-74 >seq1741 Length=13656 Score = 291 bits (322), Expect = 7e-74 Identities = 649/966 (67%), Gaps = 10/966 (1%) Strand=Plus/Minus Query 89419 AGTGGTATCGTAAACTGGAACGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAAGAG 89478 || || ||| | ||||||||||| || | ||| ||||| |||||||| || ||||| ||| Sbjct 4775 AGCGGCATCCTCAACTGGAACGACATCCCGTACCCGTCGTTCTATCGGGCCTACAAGGAG 4716 Query 89479 TTAACTACAAATTACTGGTTGCCTGATGAGGTAGACATGAAGAGCGATGCCAAGCAGTAC 89538 | | || || | |||| | ||||| ||||| ||||||||| ||||||| |||||| Sbjct 4715 CTGTCGACCAACTTCTGGATTCCTGACGAGGTCGACATGAAGCTCGATGCCCGCCAGTAC 4656 Query 89539 AACCACTT--ATCCGAA-GAAGAGAAATATGCGTTTGATTCCATTATCGGACTTTTAGCT 89595 | | | || || ||| |||| || | || ||||| ||||| || | || Sbjct 4655 GGCGAGCTCAATGCGCGCGAAAAGAAC---GCCTACGACTCCATCATCGGCCTGCTGGCC 4599 Query 89596 ACACTTGACTCACCCCAAACACGTTTTATTTATAATATCGCAGAGTATGTCAGTGATGCC 89655 || || |||||||| || || || || || || || | || ||||| ||| ||| || Sbjct 4598 ACGCTCGACTCACCGCAGACCCGCTTCATCTACAACGTGGCCGAGTACATCACCGATCCC 4539 Query 89656 TCTGTTCATGCTATTACAGCTATCATTGCACAACAAGAGGCTATTCATAATGAGAGTTAT 89715 | | ||||| | | |||| ||||| | || || || | || || || ||||| || Sbjct 4538 GCCGCGCATGCCAATGCAGCGATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTAC 4479 Query 89716 TCTTATGTACTTGCTTCTATTACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCT 89775 || || || || || || || || | | | ||||| || | || ||| || Sbjct 4478 AGCTACGTTCTGGCCTCGATCACCGACCTGCCGAACCAGAACCGCATCTTCGAGATCGCC 4419 Query 89776 AGAACACACCCTACGATTATTAAACGTAATGCACCTATTATGAAGTCTTATGACGATTTC 89835 | || ||||| || || || || || || ||||| || ||| | || ||||| ||| Sbjct 4418 CGCACCCACCCGACCATCATCAAGCGCAACGCACCGATCATGGGCGCGTACGACGACTTC 4359 Query 89836 ATGAATAACAAAACACCTGAAAATATGGTAAAAGCTTTAGTACAGTCATCTATCTTAGAG 89895 ||| | || || | |||| || | || | | | ||||| || ||| | || Sbjct 4358 ATGCGCGAGAAGACCGCCGAAACGCTGCTGAAGTCGCTGATCCAGTCCTCGATCCTGGAA 4299 Query 89896 GGTATTAATTTCTACAGCGGTTTTGCTTACTTCTATAACCTTGTTCGTCAAAACAAGATG 89955 || || || ||||| ||| ||||| |||||||| ||| | || || || ||| ||| Sbjct 4298 GGCATCAACTTCTATTCCGGGTTTGCGTACTTCTACAACATGGTGCGGCAGAACCGCATG 4239 Query 89956 ACGGGAACAGGTAAAATCATTAGCTTCATTAATCGTGATGAGTTAGCCCATTCGAAGTTT 90015 | || || || || ||||| |||||||| || || || ||| | || ||| | ||||| Sbjct 4238 AACGGCACCGGCAAGATCATCAGCTTCATCAACCGCGACGAGCTGGCGCATACCAAGTTC 4179 Query 90016 ATTTCTGAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACTA 90075 || ||||| || | || || | || || ||||| || || || || | || || Sbjct 4178 ATCAGCGAGCTGATCCGCGCCATCATCGGCGAGAACCCGGAGCTGCAGACCAACGAGCTG 4119 Query 90076 AATGACTACGTGTATGCTTCTTTTAGACATGCCGTAGAGCTAGAACAAGC-GTGGTCTAG 90134 | | ||||||| | || || || ||| | ||||| || | || |||||| Sbjct 4118 ACCGCCTACGTGCACCAATCGTTCGAGCACGCCATCGAGCTGGAG-ACGCAGTGGTCGTC 4060 Query 90135 TGAGGTACTACAGGGCATTGAAGGAATTGATGTGGAAGAGATGTTAGACTATGTAAAATA 90194 ||||| || | || || || || || || ||||| |||||| | ||| || || || Sbjct 4059 GGAGGTGCTGGACGGTATCGACGGCATCGACGTGGACGAGATGGTGCGCTACGTGAAGTA 4000 Query 90195 TCGTGCTAATAAAATGTTAGGGATGCTAGGTCTTCAACCAATGTATCAAGGTCAC-ACAG 90253 || || || || ||| || ||||| || | ||| |||| || | ||| || | Sbjct 3999 CCGCGCCAACAAGATGGCCGGCATGCTCGGCATCGAACGCCTGTA-CAGCGACACCACCG 3941 Query 90254 AAAATTCTATGACATGGATTAAAGCTTACGCCGATAACTTTACAGAAACAAAAACCGACT 90313 | || ||| | ||||| || || |||||||| ||||| || ||||| || ||||||| Sbjct 3940 ACAACGTGATGCCGTGGATCAAGGCCTACGCCGACAACTTCACTGAAACCAAGACCGACT 3881 Query 90314 TTTTCGAAATGCGTAACTCTAGTTACAAGAAAACAAACTTAGACAATGGGTTCGATGACT 90373 | ||||| ||||| || | ||||||||||| || ||| | ||||| || ||||| ||| Sbjct 3880 TCTTCGAGATGCGCAATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGACGACC 3821 Query 90374 TATGAG 90379 | |||| Sbjct 3820 TCTGAG 3815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425640745156202