Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 1e-15 >seq3 Length=15630833 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| | |||||||| ||||| || |||| || |||| || Sbjct 4184345 AATGCAGATTTTCGTGAAAACTCTTACTGGAAAGACTATCACTCTAGAGGTTGAAGCCTC 4184404 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| |||||| ||| || || || || || ||||| || || ||||| || Sbjct 4184405 GGACACTATTGAAAACGTCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGATCA 4184464 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||||||||| | ||||| |||||||| || ||| Sbjct 4184465 GCAAAGATTGATCTTCGCCGGGAAGCAGCTTGAGGAT 4184501 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| ||||||||||| || | || || || | ||| Sbjct 4183607 ATGCAAATCTTCGTCAAAACGTTGACAGGAAAAACTATCACCCTGGAGGTGGAGGCTTCC 4183666 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || ||| ||||| ||||| || ||||| || || ||||| || Sbjct 4183667 GATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAG 4183726 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||||| |||||||| || || |||||| | || || || || Sbjct 4183727 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGACGGAAGAACTCTTTCGGACTACAAC 4183786 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || || || || ||| Sbjct 4183787 ATCCAGAAGGAGTCCACTCTCCACTTGGTG 4183816 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | || ||| | ||||||||||| || ||| | |||||||||| || Sbjct 4184062 AATGCAGATCTTCGTCAAGACACTCACTGGAAAAACCATCACACTCGAAGTCGAAGCCTC 4184121 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || ||| || ||||| || ||||| || || ||||| || Sbjct 4184122 CGACACCATTGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 4184181 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 ||| ||||||| | |||||||||| Sbjct 4184182 GCAACGATTGATCTTTGCCGGTAAG 4184206 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||| || || || ||||| | |||||||| | || Sbjct 1644094 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTACCCTCGAAGTCGAGGCCTCC 1644035 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || ||| || ||||| || ||||| || || ||||| || Sbjct 1644034 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 1643975 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||||||||| | ||||| ||||| ||||| ||| Sbjct 1643974 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGAT 1643939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731842276848400