Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq1247 111 5e-20 >seq1247 Length=56584 Score = 111 bits (122), Expect = 5e-20 Identities = 220/322 (68%), Gaps = 8/322 (2%) Strand=Plus/Plus Query 40430 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACG 40489 |||||||||||||| ||| |||||| ||| ||||| | || || || | || Sbjct 20916 GATCTGCGCGACCTGATCGCGCCCGTATTTCTCCTGAACGTAGCGAATAACTTCTTCGCG 20975 Query 40490 ACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40547 || || | || ||||||||| |||| |||||||| || ||||| || || || ||| Sbjct 20976 GCGATCCTGACA--GAAGTCGATATCGAAGTCGGGCATCGATACGCGATCTGGATTGAGG 21033 Query 40548 AACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAG 40607 || || ||||| | || | |||||| || | ||| || ||| | | || Sbjct 21034 AAGCGTTCGAACAGAAGCGAGAAGCGCAGCGGATCAACGTCTGTAATCGTCAAAGCATAA 21093 Query 40608 GCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGAC--CCAGACGCCGTTCTCCT 40665 ||||| |||||||| || |||| || ||||| || || || | || | ||| | | Sbjct 21094 GCGACGAGCGAACCCGCACCAGAACCACGCCCCGGTCCTACAGGAATACCCTGTTGT--T 21151 Query 40666 TCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGA 40725 | ||||| ||| |||||||| |||| |||||||| |||||| ||| || | | Sbjct 21152 TGGCCCATTTGATAAAGTCCGCAACGATCAGGAAGTAACCCGGGAACTTCATGCGGGTAA 21211 Query 40726 TCATGTCGATCTCGTACTGGAG 40747 | ||| |||||||||| | ||| Sbjct 21212 TAATGCCGATCTCGTAATCGAG 21233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163878477017132