Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq1462 352 1e-92 seq2875 93.3 2e-14 >seq1462 Length=14439 Score = 352 bits (390), Expect = 1e-92 Identities = 545/768 (71%), Gaps = 14/768 (2%) Strand=Plus/Plus Query 59440 CTCGACACGATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCG 59499 || || ||||||||| | |||| |||||||||| ||||| |||||| ||||||| Sbjct 2 CTGGATACGATCCAGAACGCCGTCGGTGCTGTGACACTGATGGATGACGCCTCCACGCCG 61 Query 59500 CACGAGGAGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTAC 59559 || || || || || ||||||| | || |||||| |||| || || | | || Sbjct 62 CATGAAGAAGCTGTTCTGTCGAACATTTCCTTTATGGAGGCGGTTCATGC-ACGGTCTTA 120 Query 59560 AGCAAC-ATCTTCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTC 59618 | | |||||||||||||||||| | | || | |||| || | |||||||| Sbjct 121 TTCGTCGATCTTCTCGACGCTGTGCCTGACGCCTGACGTAGACGATGCCTATCGCTGGTC 180 Query 59619 GGAGGAGAATCCGAA--CCTGCAACGCAAGGCTCAGATCGTCCTGGACTACTACCAGGGT 59676 ||| |||| |||| ||||||| | ||| | ||| | |||| || | ||| | | | Sbjct 181 GGA--AGAAAACGAATTCCTGCAAAGGAAGTCGCAGCTGATCCTTGAAAATTACAATGCT 238 Query 59677 GACGATCCGCTGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCG 59736 || |||||||| ||| |||| | ||| ||| ||||| | ||||||||||| ||| Sbjct 239 GAAGATCCGCTTAAGAAGAAGATTGCCAGCGTGTTTCTGGAAAGCTTCCTGTTCTATTCG 298 Query 59737 GGCTTCTACCTGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATG 59796 |||||||| ||||||||||||||||| || || | ||||| || || ||||| ||| | Sbjct 299 GGCTTCTATCTGCCGATGTACTGGTCGAGCCGTGCCAAGCTCACCAATACGGCTGACCTT 358 Query 59797 ATCCGGCTCATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAG 59856 || || || ||||| || || || || || || ||||| |||||||| || |||| ||| Sbjct 359 ATTCGCCTTATCATCCGCGATGAAGCCGTTCATGGCTATTACATCGGCTATAAGTATCAG 418 Query 59857 CGCGGCCTGGAGACTCAGAACGAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGT 59916 |||| || |||| | | || || ||||| | ||||||| | | || | Sbjct 419 CGCGCTCTTGAGAAGCTTGATGAAGCCAAAAAACAGGAGATCAAGGACTTTGCCTTCGAT 478 Query 59917 CTGCTACTCGAGTTGTACGACAACGAGATTGAG-TACACGCAGGATCTGTACGACGGCGT 59975 ||| | || ||| | |||||||| || | || | || || | | || || || ||||| Sbjct 479 CTGTTGCTGGAGCTTTACGACAATGA-AGTGCGTTATACCGAAGCGCTATATGATGGCGT 537 Query 59976 GGGACTGACTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAA 60035 || ||||| || |||||||| | |||||||| ||||| || ||||||||||||||||| Sbjct 538 TGGTCTGACCGAAGATGTCAAAAAGTTCCTGCATTACAATGCAAACAAGGCGCTGATGAA 597 Query 60036 TCTCGGCTACGAGGCGCTGTTCCCGCGCGACGAAAC---CGAGGTGAATGCGGCGATCTT 60092 || || ||||| || ||||| ||| ||| ||| | | |||| || |||||||| | Sbjct 598 CCTTGGTTACGAAGCCCTGTTTCCG-GCG--GAAGCCTGCAAGGTCAACCCGGCGATCCT 654 Query 60093 GGCGGCACTGTCCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCAC 60152 | || || || || | ||||| ||||||||||||||||| || || || | Sbjct 655 CTCAGCGCTTTCGCCGAATGCCGACGAAAACCACGACTTCTTCTCCGGTTCGGGTTCTTC 714 Query 60153 GTATGTGATTGGCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTT 60200 |||||||| |||||||||| | || ||||| || || |||||||| Sbjct 715 CTATGTGATCGGCAAGGCTGTTGCGACAGAAGATGATGACTGGGACTT 762 >seq2875 Length=2430 Score = 93.3 bits (102), Expect = 2e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 61684 ATCGCGGAGATGCCGTTCATCTACCCGCACCTGGCGCTGATGCCGGATGCCCACTCGGGC 61743 ||||| | ||| |||||| || ||| |||| |||||||||| | ||| |||| Sbjct 568 ATCGCCGCGATCCCGTTCGTCGGGCCGTGGGTGGCCGTGATGCCGGACGTGCACCTGGGC 627 Query 61744 AAGGGATCTGCGGTCGGCACCGTCATCCCCACCAAGGGCGCTGTCATTCCGGCCGCTGTT 61803 ||||| | | || ||| | || ||||| || ||||||| |||| |||||||| || Sbjct 628 AAGGGCGCGACCGTGGGCTCGGTGATCCCGACGCAGGGCGCGATCATCCCGGCCGCGGTC 687 Query 61804 GGGGTGGACATCGGCTGCGGCATG 61827 || || |||||||||||||||||| Sbjct 688 GGCGTCGACATCGGCTGCGGCATG 711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258920947052724