Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 102 2e-16 >seq3 Length=15630833 Score = 102 bits (112), Expect = 2e-16 Identities = 112/146 (77%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||| |||| || || ||||| ||||||||||| || | || || ||| Sbjct 5741672 ATTGTCATACGAGATGGAACGGCGTGAGGATTAATGATGATGTCCGGAGTAAGACCTTCA 5741731 Query 251905 GCAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTTTCCAATAGTTCCCTTTTGTCCG 251961 |||||||| |||||||| ||||| | ||| || |||| ||||| ||||| |||||| Sbjct 5741732 GCAGTGAAAGGCATATC---TTCCTGGCGATACATAATTCCCATAGTACCCTTCTGTCCG 5741788 Query 251962 TGACGAGAACTGAACTTATCACCAAT 251987 |||||||| ||||| || ||||| Sbjct 5741789 TGACGAGAGGCAAACTTGTCTCCAAT 5741814 Score = 84.2 bits (92), Expect = 6e-11 Identities = 210/310 (68%), Gaps = 13/310 (4%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || |||| ||| ||||| ||||||||||| | || |||| | | |||| | | Sbjct 5027129 CCGACAGAATCGATTTCATCAATGAAAATGATGCAAGGAGCACGGGCTTTCGCCTTGTCG 5027070 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA---A 289146 || | ||||| || || ||||| | ||||| ||| ||| | ||||| || | Sbjct 5027069 AACAGATCTCTGACGCGACGAGCTCCTTGTCCAACCAACACTTCATCGAATTCTGATCCA 5027010 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 |||| || || | ||||| || | |||||| || || | || || ||||| | ||| Sbjct 5027009 GCGG-TA--TGGAAGAATGGAACTTGTGCTTCTCCAGCAATCGCTCTTGCCAGCAACGTC 5026953 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 || |||||||| ||||| || | | || ||||| || |||| | | ||| || | Sbjct 5026952 TTTCCTGTTCCTGGTGGACCAACAAGCAGGACTCCTTTCGGTAGACGTCCGCCA--AGTC 5026895 Query 289267 T--TATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 | || ||||| || ||||| ||| | |||||||| ||||| | ||| |||||| Sbjct 5026894 TAGAGTACTTCTC-TGGATCTTTCAAATAGTCTACAATCTCCTCGACTTCCAGCTTTGCC 5026836 Query 289324 TCATCACATC 289333 ||||| |||| Sbjct 5026835 TCATC-CATC 5026827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471756331452913