Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq1247 129 2e-25 >seq1247 Length=56584 Score = 129 bits (142), Expect = 2e-25 Identities = 224/322 (70%), Gaps = 8/322 (2%) Strand=Plus/Plus Query 40178 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACG 40237 |||||||||||||| ||| |||||| ||| ||||| | || || || | || Sbjct 20916 GATCTGCGCGACCTGATCGCGCCCGTATTTCTCCTGAACGTAGCGAATAACTTCTTCGCG 20975 Query 40238 ACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40295 || || | || ||||||||| |||| |||||||| || ||||| || || || ||| Sbjct 20976 GCGATCCTGACA--GAAGTCGATATCGAAGTCGGGCATCGATACGCGATCTGGATTGAGG 21033 Query 40296 AAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAG 40355 ||||| ||||| | ||| | |||||| || | ||| || ||| | | || Sbjct 21034 AAGCGTTCGAACAGAAGCGAGAAGCGCAGCGGATCAACGTCTGTAATCGTCAAAGCATAA 21093 Query 40356 GCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGAC--CCAGACCCCGTTCTCCT 40413 ||||| |||||||| || |||| || ||||| || || || | |||| ||| | | Sbjct 21094 GCGACGAGCGAACCCGCACCAGAACCACGCCCCGGTCCTACAGGAATACCCTGTTGT--T 21151 Query 40414 TCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGA 40473 | ||||| ||| |||||||| |||| |||||||| ||||||| ||| || | | Sbjct 21152 TGGCCCATTTGATAAAGTCCGCAACGATCAGGAAGTAACCCGGGAACTTCATGCGGGTAA 21211 Query 40474 TCATGTCGATCTCGTACTGGAG 40495 | ||| |||||||||| | ||| Sbjct 21212 TAATGCCGATCTCGTAATCGAG 21233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163318498622982