Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq365 244 4e-60 >seq365 Length=3923 Score = 244 bits (270), Expect = 4e-60 Identities = 244/314 (78%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 31492 CAACACCACTTCGGTTGTGTAGCGATCACCACCGTCGGAGTGCTGCCACTTGCGGGTTTG 31551 |||||| | |||||| ||||||| || |||| || ||||||||||||||| || Sbjct 962 CAACACGATTTCGGTGCTGTAGCGGTCGTTGCCGTTCTGGTCCTGCCACTTGCGGGTCTG 1021 Query 31552 CAGCTTGCCCTCGATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGAC 31611 ||| ||| ||||| |||||||| | ||||||||||| || |||||| ||||||| | Sbjct 1022 CAGTGCGCCTTCGATATAAACCTTGGCACCCTTTTTCAGATACTGCTCGGCAACCTTGGC 1081 Query 31612 GAGACCTTCGGTGAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCT 31671 ||| |||| |||| | ||| ||||| ||||| ||||| || |||||||| |||||| | Sbjct 1082 AAGATTTTCGTTGAAAATGACAACGCTGTGCCATTCGGTACGATCCTTGCGTTCGCCGGT 1141 Query 31672 GTCGCGGTCGCGCCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTA-CCCCCGG 31730 | ||||||||||||||||| |||||||||| ||| || ||||||| | | || | Sbjct 1142 CTGACGGTCGCGCCAGCTTTCCGAAGTCGCAATGCGCAGATTGGCGATCTGATCGCCTGA 1201 Query 31731 CTTGTGTCTTTCGGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGA 31790 ||| | | || ||||| |||||||| || |||| ||||| |||||||||||||||| Sbjct 1202 ATTGAGGC-GACGAATTTCAGGATCGGCACCAAGATTGCCGACCAGAATGACTTTGTTGA 1260 Query 31791 CGCTACCGGCCATC 31804 ||||||| |||||| Sbjct 1261 CGCTACCAGCCATC 1274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169798248612432