Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_021781.2 Length=135281 Score E Sequences producing significant alignments: (Bits) Value seq1741 291 7e-74 >seq1741 Length=13656 Score = 291 bits (322), Expect = 7e-74 Identities = 648/965 (67%), Gaps = 8/965 (1%) Strand=Plus/Minus Query 99502 AGTGGTATCGTAAACTGGAACGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAAGAG 99561 || || ||| | ||||||||||| || | ||| ||||| |||||||| || ||||| ||| Sbjct 4775 AGCGGCATCCTCAACTGGAACGACATCCCGTACCCGTCGTTCTATCGGGCCTACAAGGAG 4716 Query 99562 TTAACTACAAATTACTGGTTGCCTGATGAGGTAGATATGAAGAGCGATGCCAAACAGTAC 99621 | | || || | |||| | ||||| ||||| || |||||| ||||||| |||||| Sbjct 4715 CTGTCGACCAACTTCTGGATTCCTGACGAGGTCGACATGAAGCTCGATGCCCGCCAGTAC 4656 Query 99622 AACCACTT--ATCCGAAGAAGAGAAGTATGCGTTTGACTCCATTATCGGACTTTTAGCTA 99679 | | | || || || ||| | || | |||||||| ||||| || | || | Sbjct 4655 GGCGAGCTCAATGCGCGC--GAAAAGAACGCCTACGACTCCATCATCGGCCTGCTGGCCA 4598 Query 99680 CACTTGACTCACCCCAAACACGTTTTATTTATAACATTGCAGAGTATGTCAGTGATGCCT 99739 | || |||||||| || || || || || || ||| | || ||||| ||| ||| || Sbjct 4597 CGCTCGACTCACCGCAGACCCGCTTCATCTACAACGTGGCCGAGTACATCACCGATCCCG 4538 Query 99740 CCGTTCATGCTATTACAGCTATCATTGCACAACAAGAAGCTATTCATAATGAGAGTTATT 99799 ||| ||||| | | |||| ||||| | || || |||| || || || ||||| || Sbjct 4537 CCGCGCATGCCAATGCAGCGATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTACA 4478 Query 99800 CTTATGTACTTGCTTCTATTACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCTA 99859 || || || || || || || || | | | ||||| || | || ||| || Sbjct 4477 GCTACGTTCTGGCCTCGATCACCGACCTGCCGAACCAGAACCGCATCTTCGAGATCGCCC 4418 Query 99860 GAACACACCCTACGATTATTAAACGTAATGCACCTATTATGAAGTCTTATGACGATTTCA 99919 | || ||||| || || || || || || ||||| || ||| | || ||||| |||| Sbjct 4417 GCACCCACCCGACCATCATCAAGCGCAACGCACCGATCATGGGCGCGTACGACGACTTCA 4358 Query 99920 TGAATAACAAAACACCTGAGAATATGGTAAAAGCTTTAGTACAGTCATCTATCTTAGAGG 99979 || | || || | || | || | || | | | ||||| || ||| | || | Sbjct 4357 TGCGCGAGAAGACCGCCGAAACGCTGCTGAAGTCGCTGATCCAGTCCTCGATCCTGGAAG 4298 Query 99980 GTATTAATTTCTACAGCGGTTTTGCTTACTTCTACAACCTCGTTCGTCAAAACAAGATGA 100039 | || || ||||| ||| ||||| |||||||||||| | || || || ||| |||| Sbjct 4297 GCATCAACTTCTATTCCGGGTTTGCGTACTTCTACAACATGGTGCGGCAGAACCGCATGA 4238 Query 100040 CGGGGACAGGTAAAATCATTAGCTTCATTAATCGTGATGAATTAGCCCATTCGAAATTTA 100099 || || || || ||||| |||||||| || || || || | || ||| | || || | Sbjct 4237 ACGGCACCGGCAAGATCATCAGCTTCATCAACCGCGACGAGCTGGCGCATACCAAGTTCA 4178 Query 100100 TTTCTGAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACTAA 100159 | ||||| || | || || | || || ||||| || || || || | || || | Sbjct 4177 TCAGCGAGCTGATCCGCGCCATCATCGGCGAGAACCCGGAGCTGCAGACCAACGAGCTGA 4118 Query 100160 ATGACTACGTGTACGCTTCTTTTAGACATGCCGTAGAGCTAGAACAAGC-GTGGTCTAGT 100218 | ||||||| || || || || ||| | ||||| || | || |||||| Sbjct 4117 CCGCCTACGTGCACCAATCGTTCGAGCACGCCATCGAGCTGGAG-ACGCAGTGGTCGTCG 4059 Query 100219 GAGGTACTACAAGGCATTGAAGGAATTGATGTGGAAGAAATGTTAGACTATGTAAAATAT 100278 ||||| || | || || || || || || ||||| || ||| | ||| || || || Sbjct 4058 GAGGTGCTGGACGGTATCGACGGCATCGACGTGGACGAGATGGTGCGCTACGTGAAGTAC 3999 Query 100279 CGTGCTAATAAAATGTTAGGGATGTTAGGTCTTCAACCAATGTATCAAGGTCAC-ACAGA 100337 || || || || ||| || ||| | || | ||| |||| || | ||| || || Sbjct 3998 CGCGCCAACAAGATGGCCGGCATGCTCGGCATCGAACGCCTGTA-CAGCGACACCACCGA 3940 Query 100338 AAATTCTATGACATGGATTAAAGCTTACGCCGATAACTTTACAGAAACAAAAACCGACTT 100397 || ||| | ||||| || || |||||||| ||||| || ||||| || |||||||| Sbjct 3939 CAACGTGATGCCGTGGATCAAGGCCTACGCCGACAACTTCACTGAAACCAAGACCGACTT 3880 Query 100398 TTTCGAAATGCGTAATTCTAGTTACAAGAAAACAAATTTAGACAATGGGTTCGATGACTT 100457 ||||| ||||| ||| | ||||||||||| || || | ||||| || ||||| ||| | Sbjct 3879 CTTCGAGATGCGCAATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGACGACCT 3820 Query 100458 ATGAG 100462 |||| Sbjct 3819 CTGAG 3815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432757263350938