Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3 136 4e-27 >seq3 Length=15630833 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || || | ||||| ||||| | Sbjct 4185304 ATGCAGATCTTCGTCAAGACGCTTACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCG 4185363 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||||||||| |||||||| || || ||||| Sbjct 4185364 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCGCCAGATCAG 4185423 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| || || || ||||| |||||| | | | |||| || || ||| Sbjct 4185424 CAACGATTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGTACCTTGTCCGACTACAAC 4185483 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || || || ||||||||| Sbjct 4185484 ATCCAGAAGGAGTCCACTCTCCACTTGGTG 4185513 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || ||||| || ||||| |||||||| || ||| || Sbjct 1644094 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTACCCTCGAAGTCGAGGCCTCC 1644035 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| |||||||| || || || || Sbjct 1644034 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 1643975 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||| ||||| || || || |||||| | | | || || || ||| Sbjct 1643974 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 1643915 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || |||||||| | || | || ||||| Sbjct 1643914 ATCCAGAAGGAGTCCACTCTCCACTTGGTTCTCCGTCTTCGTGGAGG 1643868 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| || ||||| | Sbjct 4185532 ATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTCT 4185591 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| || || |||||||| || || || ||| Sbjct 4185592 GACACCATCGAAAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAA 4185651 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| |||||||| || |||| ||| |||| |||| ||||| ||| Sbjct 4185652 CAAAGACTCATCTTCGCCGGGAAGCAATTGGAAGATGGTAGAACTCTGTCGGATTACAAC 4185711 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || |||||||| ||||| || || |||| Sbjct 4185712 ATCCAAAAGGAGTCGACGCTCCATCTTG 4185739 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || ||||| || || |||||||| |||||| || Sbjct 4184063 ATGCAGATCTTCGTCAAGACACTCACTGGAAAAACCATCACACTCGAAGTCGAAGCCTCC 4184122 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| || || ||||| Sbjct 4184123 GACACCATTGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 4184182 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||| |||||||||||||| || Sbjct 4184183 CAACGATTGATCTTTGCCGGTAA 4184205 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || || | ||||| ||||| | Sbjct 4184574 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTTTGGAAGTGGAAGCTTCT 4184633 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| |||||||||||||| || ||||| || || ||||| Sbjct 4184634 GACACAATCGAGAATGTCAAAGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAG 4184693 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| || |||||||||||| |||| | || || || ||| Sbjct 4184694 CAGAGACTCATCTTCGCCGGAAAGCAGCTGGAGGATGGAAGAACTCTTTCGGACTACAAC 4184753 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || || || || |||||| Sbjct 4184754 ATCCAGAAGGAGTCCACTCTCCATTTGGTG 4184783 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | |||||| | || || |||||||| || || || || || || || Sbjct 4183607 ATGCAAATCTTCGTCAAAACGTTGACAGGAAAAACTATCACCCTGGAGGTGGAGGCTTCC 4183666 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| || ||||||||||| |||||||| || || || || Sbjct 4183667 GATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAG 4183726 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| || ||||| ||||| |||| | || || || ||| Sbjct 4183727 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGACGGAAGAACTCTTTCGGACTACAAC 4183786 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || || || ||||||||| Sbjct 4183787 ATCCAGAAGGAGTCCACTCTCCACTTGGTG 4183816 Score = 107 bits (118), Expect = 2e-18 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || | ||||| || || | Sbjct 4186036 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATCACCTTGGAAGTCGAGGCTTCT 4186095 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||||||||| |||||||| || || || || Sbjct 4186096 GACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAG 4186155 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTAT 24880 || || |||||||| || || || ||||| ||||| || || || |||| || || Sbjct 4186156 CAGCGCTTGATCTTCGCTGGAAAGCAGCTCGAGGA--CG-GACGCACTTTGTCCGACTAC 4186212 Query 24881 AACATTCAAAAGGAATCGACACTACA 24906 ||||| |||||||| ||||| || || Sbjct 4186213 AACATCCAAAAGGAGTCGACCCTTCA 4186238 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || || | ||||| ||||| | Sbjct 4185760 ATGCAGATCTTCGTCAAGACGCTTACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCG 4185819 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| |||||||| || || |||||| Sbjct 4185820 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAA 4185879 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||| | ||||||||||| || Sbjct 4185880 CAAAGATTGATCTTTGCTGG 4185899 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || || | || || || || || Sbjct 4183835 ATGCAAATCTTCGTCAAGACACTCACTGGAAAGACCATCACTTTGGAGGTCGAGGCTTCC 4183894 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| |||||||| || ||||| || || ||||| Sbjct 4183895 GATACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 4183954 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| || ||||| |||||| | | | | || || || ||| Sbjct 4183955 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGACGTACCCTCTCGGACTACAAC 4184014 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||||||||| || |||||||| Sbjct 4184015 ATCCAGAAGGAATCGACTCTTCACTTGGT 4184043 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| || ||||| | Sbjct 4185076 ATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTCT 4185135 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| |||||||| || ||||| || || || || Sbjct 4185136 GACACCATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATTCCACCAGACCAG 4185195 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| || || || |||||| | | | || ||||| ||| Sbjct 4185196 CAGAGACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACAAC 4185255 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || ||||| || || || || Sbjct 4185256 ATCCAGAAGGAGTCTACTCTCCA 4185278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449879328533720