Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 8e-16 >seq5 Length=22087214 Score = 98.7 bits (108), Expect = 8e-16 Identities = 115/155 (74%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 34494 CGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTT 34553 |||||| | || ||||| ||||| || | |||||| |||||| |||||||| || || Sbjct 2459983 CGGACGCTCGAGAGCCTTCGCGATATCAGACATGTTCGAGATGACGGTCTTGATTCCATT 2460042 Query 34554 GCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGC 34613 ||||| ||||||||||| || | | ||||| |||||||||||||||| || || Sbjct 2460043 CCCCTTGCCTTCGACCTTAGCCGACAGCTTTGGCATCTTGTAGCGGTAGAACGGATCAGC 2460102 Query 34614 CACATTGCGGTTAACGTTCACAGTCCCCATCGTGG 34648 ||| ||||| ||||| | || ||||| ||| Sbjct 2460103 GACAGCACGGTTCACGTTGAGAG---CCATCTTGG 2460134 Score = 98.7 bits (108), Expect = 8e-16 Identities = 115/155 (74%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 34494 CGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTT 34553 |||||| | || ||||| ||||| || | |||||| |||||| |||||||| || || Sbjct 2473212 CGGACGCTCGAGAGCCTTCGCGATATCAGACATGTTCGAGATGACGGTCTTGATTCCATT 2473271 Query 34554 GCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGC 34613 ||||| ||||||||||| || | | ||||| |||||||||||||||| || || Sbjct 2473272 CCCCTTGCCTTCGACCTTAGCCGACAGCTTTGGCATCTTGTAGCGGTAGAACGGATCAGC 2473331 Query 34614 CACATTGCGGTTAACGTTCACAGTCCCCATCGTGG 34648 ||| ||||| ||||| | || ||||| ||| Sbjct 2473332 GACAGCACGGTTCACGTTGAGAG---CCATCTTGG 2473363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412825252633757