Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq1384 282 7e-71 >seq1384 Length=26501 Score = 282 bits (312), Expect = 7e-71 Identities = 327/437 (75%), Gaps = 14/437 (3%) Strand=Plus/Plus Query 35452 GGGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAG- 35510 ||||||| || |||||||||||||| || || || ||||| |||||| | |||||| Sbjct 1444 GGGTCACGCCGGTCTGGCCCTGGTACTTGCCACCACGATCGCGGTACGACGTCTCGCAGA 1503 Query 35511 -----TCCTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACAC 35565 || || | || ||| ||||||||||||||||| ||||| || ||||| | | Sbjct 1504 TGTCATCGGCGGCCGCCTGGAAGAACAGCATCTGCGCCACGCCTTCATTGGCGTAGATGC 1563 Query 35566 GCGCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTT 35625 |||| ||||| || ||||||||||| ||||| || || || ||||||||||| || | Sbjct 1564 GCGCTGGCAGCGGCGTGGTGTTGCTGAATTCCAGGGTGACGTGGCCTTCCCACTCCGGCT 1623 Query 35626 CCAGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACA 35685 ||||||| ||||||||||||||||| || |||||||||||||||||||| |||| |||| Sbjct 1624 CCAGCGGGGTCACGTTGACGATGATGCCGCAGCGCGCGTAGGTGCTCTTGCCCAGGCACA 1683 Query 35686 CCACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGT 35745 |||| ||| || |||||| ||||||||||| || || ||||| |||| |||||||||| Sbjct 1684 CCACCAGGGTGTCGCGCGGGATGCGGAAGTACTCCACGGTGCGCGCCAACGCGAAGCTGT 1743 Query 35746 TCGGCGGAATCAGGATGCTGTCAGCCTTAACCGGCTGCAGGCACTTG---GGATCGAAGT 35802 | ||||| || ||||| ||| | || | || | | || |||||||||| Sbjct 1744 TGGGCGGGAT---GATGCATTCATCGCCGACGATATCCACGAAGCTGCCCGGATCGAAGT 1800 Query 35803 TCTTCGGATCAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCA- 35861 ||| ||||| || | | ||||||||| ||||| || | |||| || |||| Sbjct 1801 GCTTGGGATCGACGATGGTCGAGTTGATGTTAGTGAACACCTTGAACTC-GCGCGAGCAG 1859 Query 35862 CGCACGTCATAACCATA 35878 |||||||| || || || Sbjct 1860 CGCACGTCGTAGCCGTA 1876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825883257453960