Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3 132 3e-26 >seq3 Length=15630833 Score = 132 bits (146), Expect = 3e-26 Identities = 160/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || || | || |||| Sbjct 1643883 AGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCC 1643942 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||||||||||||||||| || |||||||||| | || | || |||||||| Sbjct 1643943 TCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCT 1644002 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || || | || ||||||||| || | ||| || | Sbjct 1644003 TGGATCTTAGCCTTGAC--ATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTG 1644060 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 |||| ||||| || ||||| || ||||| ||||||| Sbjct 1644061 TCTTACCCGTCAGAGTCTTGACGAAGATTTGCATGA 1644096 Score = 132 bits (146), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | || |||| ||| | ||| ||||||||| ||||| ||||| | Sbjct 4185532 TTCCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 4185473 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | | || |||| || || |||||||| |||||||||| ||||||||| ||| ||| Sbjct 4185472 ACAAGGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGCG 4185413 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || |||||||| | ||||| |||||| || || || | || || || Sbjct 4185412 GGATTCCTTCCTTGTCTTGGATTTTGGCTTTGAC--ATTCTCAATGGTGTCCGAAGCTTC 4185355 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || | || ||||||||||| || || ||||| || ||||||||||| Sbjct 4185354 GACTTCCAAAGTGATGGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4185304 Score = 127 bits (140), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | || |||| ||||| || |||||||| ||||| ||||||| Sbjct 4184063 TTCCTCCTCTGAGGCGGAGAACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCG 4184004 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| | || |||| || || ||||||||||||||||| |||| ||||| ||| | | Sbjct 4184003 AGAGGGTACGTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTG 4183944 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | ||||||||||| | || || ||||| || || || | || ||||| Sbjct 4183943 GGATTCCCTCCTTGTCTTGAATCTTGGCCTTGAC--ATTCTCAATGGTATCGGAAGCCTC 4183886 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || | || ||||||||||| ||||| ||||| || ||||| ||||| Sbjct 4183885 GACCTCCAAAGTGATGGTCTTTCCAGTGAGTGTCTTGACGAAGATTTGCAT 4183835 Score = 127 bits (140), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | || |||| || | ||| ||||||||| ||||| ||||||| Sbjct 4184802 TTCCTCCTCTGAGACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 4184743 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | |||| ||||| ||||||||||||||||| |||| ||||| ||| | | Sbjct 4184742 AAAGAGTTCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTG 4184683 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | ||||||||||| | || || |||||| || || || | ||| || || Sbjct 4184682 GGATTCCCTCCTTGTCTTGGATCTTGGCTTTGAC--ATTCTCGATTGTGTCAGAAGCTTC 4184625 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || ||||||||||| ||||||||||| || ||||| ||||| Sbjct 4184624 CACTTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 4184574 Score = 123 bits (136), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| || || || || | || |||| || ||||||||||||||||| Sbjct 4185267 CTCCTTCTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAA 4185208 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| |||| ||||||||| | || | ||||||||||| | || || |||||| | Sbjct 4185207 GATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGAATCTTGGCTTTGAC--A 4185150 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| || ||||| || | || ||||||||||| || || ||||| Sbjct 4185149 TTCTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTG 4185090 Query 34964 ACAAAGATCTGCAT 34977 || ||||||||||| Sbjct 4185089 ACGAAGATCTGCAT 4185076 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| ||| |||||| || ||||| ||||| || | |||| | || Sbjct 4186247 AGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCC 4186188 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| |||||||||| || ||||||||| | || | || |||||||| Sbjct 4186187 TCGAGCTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 4186128 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| ||||| || || || | ||| |||||||| || | ||| |||| Sbjct 4186127 TGGATTTTGGCCTTGAC--ATTCTCGATGGTGTCAGAAGCCTCGACTTCCAAGGTGATGG 4186070 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || || ||||| |||||||||||||| Sbjct 4186069 TCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 4186036 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| || ||||||||| ||||| |||||||| ||| | || |||| Sbjct 4184557 AGAACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCC 4184498 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||||| || |||||| ||| | || | || |||||||| Sbjct 4184497 TCAAGCTGCTTCCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCC 4184438 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||||| | | || | || ||| || || || | || || ||| Sbjct 4184437 TGGATCTTGGCTTTGACGTTTTCAATAGTGTCCGAGGCTTCAACCTCTAGAGTGATAGTC 4184378 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || || || || || |||||||| Sbjct 4184377 TTTCCAGTAAGAGTTTTCACGAAAATCTGCAT 4184346 Score = 111 bits (122), Expect = 1e-19 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | || |||| ||| | ||| ||||||||| ||||| ||||||| Sbjct 4183835 TTCCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 4183776 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | || || || ||||||||||||||||| |||| ||||||||| | | Sbjct 4183775 AAAGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTG 4183716 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || |||||||| | ||||| |||||| || || || | || ||||| Sbjct 4183715 GGATTCCTTCCTTGTCTTGGATTTTGGCTTTGAC--ATTCTCGATGGTATCGGAAGCCTC 4183658 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || | ||| || || ||||| || | || || || ||||| |||||||| Sbjct 4183657 CACCTCCAGGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCATGAT 4183604 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| || ||||| || | | |||| |||| |||||| |||||||| Sbjct 4185723 CTCCTTTTGGATGTTGTAATCCGACAGAGTTCTACCATCTTCCAATTGCTTCCCGGCGAA 4185664 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| |||| ||| |||||| | || | || ||||| || | || || || ||| Sbjct 4185663 GATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTT 4185604 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | ||| || ||||| || | || ||||||||||| || || ||||| || Sbjct 4185603 TTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGAC 4185544 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 4185543 GAAGATCTGCAT 4185532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325679903481131