Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq2875 140 9e-29 seq2112 122 2e-23 >seq2875 Length=2430 Score = 140 bits (154), Expect = 9e-29 Identities = 244/352 (69%), Gaps = 10/352 (3%) Strand=Plus/Plus Query 37166 TGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCGACCTGGGCATCATCCCTG 37225 ||||||| || ||||| ||||| || | || ||||||||||| ||||||||||| || | Sbjct 1331 TGCTGGTGACGCGCAAGGGTGCGGTCAGTGCGCGCGAGGGCGAGCTGGGCATCATTCCCG 1390 Query 37226 GCTCGATGGG--TGCGAAGTCATTCATCGTTCGCGGCAAGGGAAATTCCGAATCGTTCTG 37283 || ||||| ||| || | |||||| || |||||||| || | || ||| Sbjct 1391 GCAGCATGGGCACGCGCAG--CTACATCGTGCGTGGCAAGGGCAACGCGGACAGCTTCCA 1448 Query 37284 CTCTTGCAGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAGCAAAACGCCGGTTCAC 37343 | |||||||| |||||||| || |||||||||| | | || | | | |||| Sbjct 1449 CAGCTGCAGCCATGGTGCCGGCCGGGTGATGAGCCGTGGCACCGCGCGCCAGCAGATCAC 1508 Query 37344 ---AGTCGAGGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCAAAGATGCCGAAGT 37400 | | || ||| || || || | | | | || |||||||| || || || Sbjct 1509 GCTGGCCCAGCATCGCGAAGCAACCGCGCACG---TGGAATGCCGCAAGGACAGCGGCGT 1565 Query 37401 GATCGACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGC 37460 | | |||||| | || || || |||||| ||||| | || ||||| ||||| || Sbjct 1566 GCTGGACGAGTCACCGGCCGCGTACAAGTCGATCGACGACGTGATGGCGGCGCAGCTCGA 1625 Query 37461 CCTGGTGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGGTTGA 37512 |||||| ||| | ||||||||||||||||| || | ||||||||||| ||| Sbjct 1626 CCTGGTCGACGTGGTGCACACGCTGCGCCAGGTGCTGTGCGTGAAGGGATGA 1677 >seq2112 Length=10038 Score = 122 bits (134), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 23536 CTTCCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGG 23595 || ||||||||||| ||||||||||| |||||| ||| ||||||||||||||| |||||| Sbjct 9119 CTGCCCTTGCGCAGGTACTCGCCGGCGATCTCGCCGAGCTTGCCGAAGAACACCACGCGG 9178 Query 23596 TGCCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTG 23655 ||||||||||| ||||| ||| | | | ||||||||| | | | ||| Sbjct 9179 TGCCATTCGGTACGTTCCT---GCTGGTTGCCATCCTTGTCCTTGCGGACGCTGGTGGTG 9235 Query 23656 GCCAGGCTGATGTTGCAGA-CGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTCATT 23714 |||||||||||| | || || ||| |||| | || ||| ||| |||||||| || Sbjct 9236 GCCAGGCTGATGCGGGTGATCGCCAT-GCCGCTCTGGGTGTACTTCACGTCCGGGTCGTT 9294 Query 23715 ACCCAGGCGGCCAATCAGGTCTACTTTGTT 23744 || ||| ||| | |||| |||||||| Sbjct 9295 GCCGAGGTTGCCGACCAGGATGACTTTGTT 9324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139277826192988