Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 >seq3 Length=15630833 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || |||||||| || ||||| ||||| || ||| | || ||||||| | Sbjct 4183607 ATGCAAATCTTCGTCAAAACGTTGACAGGAAAAACTATCACCCTGGAGGTGGAGGCTTCC 4183666 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || ||| || || || || ||||| | || || ||| Sbjct 4183667 GATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAG 4183726 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | || || || ||||| ||||||| | ||| | ||||||||||| Sbjct 4183727 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGACGGAAGAACTCTTTCGGACTACAAC 4183786 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 4183787 ATCCAGAAGGAGTCCACTCTCCACTTGGTG 4183816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398861005600561