Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13]
3,249 sequences; 137,395,604 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq3 87.8 3e-12
>seq3
Length=15630833
Score = 87.8 bits (96), Expect = 3e-12
Identities = 155/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | ||||| || ||||||||||| || || | || || || | ||
Sbjct 4183608 TGCAAATCTTCGTCAAAACGTTGACAGGAAAAACTATCACCCTGGAGGTGGAGGCTTCCG 4183667
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || | ||||| ||| ||||| ||| || ||||| || ||||| || || |
Sbjct 4183668 ATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAGC 4183727
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| |||||||| || || || || || | || || ||||| | | || || || |
Sbjct 4183728 AGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGACGGAAGAACTCTTTCGGACTACAACA 4183787
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
| || || || || ||| |||| || || | || | ||||||||
Sbjct 4183788 TCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGTCTCAGAGGAGG 4183833
Score = 87.8 bits (96), Expect = 3e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | || || | || ||||| || || ||| | || || ||| | |
Sbjct 4185533 TGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTCTG 4185592
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || || |||| || || || || || ||| ||||| || ||||| || ||||
Sbjct 4185593 ACACCATCGAAAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAAC 4185652
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|||||||||| || || || || ||||| || ||| |||||| | | ||||| || |
Sbjct 4185653 AAAGACTCATCTTCGCCGGGAAGCAATTGGAAGATGGTAGAACTCTGTCGGATTACAACA 4185712
Query 146212 TACAAAAAGAATCGACTATCCAT 146234
| ||||| || ||||| |||||
Sbjct 4185713 TCCAAAAGGAGTCGACGCTCCAT 4185735
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786134471817080
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |