Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_023498.1 Length=62466 Score E Sequences producing significant alignments: (Bits) Value seq2875 123 1e-23 >seq2875 Length=2430 Score = 123 bits (136), Expect = 1e-23 Identities = 344/517 (67%), Gaps = 28/517 (5%) Strand=Plus/Plus Query 56168 CAGCTCGGCACCCTCGGCGGCGGTAACCATTTCATCGAGCTGTGCCTCGATCACCTTGAC 56227 ||||| || || || |||||||| ||||| |||||||| |||||||| || | ||| Sbjct 934 CAGCTGGGTACGCTGGGCGGCGGCAACCACTTCATCGAACTGTGCCTGGACGAGACGGAC 993 Query 56228 CGGGTGTGGCTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGCAACAAGATCGCCCAGCGG 56287 ||||||| || | |||||| ||| || || ||| ||||||| ||||| | | | Sbjct 994 ACGGTGTGGGTGATGCTGCACAGCGGATCACGCGGCACCGGCAACCTGATCGGC-ACCTA 1052 Query 56288 CAT-ATCTCTGCGGCGCAGGGGTA--TTGCCAGGCGCAAG---GGCTGC-ACGTCCCGCA 56340 | | ||| ||||| | | | | ||| ||||| | |||| | || | ||| | Sbjct 1053 CTTCATCGAGAAGGCGCGCGAGGAACTGGCCCGGCGCGTGCTCGGCTTCCACCTGCCGGA 1112 Query 56341 CCGCGACCTCGCGTACCTCGTCGAGGGCACTGTCGA-GTTCGACCGCTACCTCGTCGAGC 56399 | ||||| |||| | || | || ||| | || |||||| |||| | | | | Sbjct 1113 CAAGGACCTGGCGTTCTTCATGGAAGGCGA-GCCGCTGTTCGATGACTACGTTGAAGCGG 1171 Query 56400 TGCGGTGGGCGCAGCGGTTCGCGTACTACAACCGCGCCGAGATGATGGACCGTTTCGCGC 56459 || |||||||||| | ||| | ||||||| | |||||| ||||| Sbjct 1172 TGTCGTGGGCGCAGGACTACGCCCGGCAGAACCGCGAGGCAATGATG-------TCGCGG 1224 Query 56460 AGGCGTTCCGGCATTGGATCGGCGCCGACGCC--CCGATCGACGAGCTGGTCGTCGA-GA 56516 || ||| || ||||| |||| |||| | |||||| | ||| | Sbjct 1225 GTGCTGGCCGAGAT-------GCGCCATCGCCTGCCGAAGTTCCAGCTGGCAG-CGATGG 1276 Query 56517 CGATCAACACGCATCACAACTACACGCAGAAGGAGCTGCACGGCGGCCGTGAGGTGTGGT 56576 || | ||| |||||||||||| |||||||||| |||| || || ||| || | Sbjct 1277 CGGTGAACTGCCATCACAACTACGTGCAGAAGGAGACGCACCACGACCAGGAGCTGCTGG 1336 Query 56577 TGACCCGCAAGGGTGCGATCGACGCGCACGAGGGTGTGCGGGGCCTGATTCCCGGCAGCA 56636 |||| |||||||||||| || |||| |||||| | || |||| | ||||||||||||| Sbjct 1337 TGACGCGCAAGGGTGCGGTCAGTGCGCGCGAGGGCGAGCTGGGCATCATTCCCGGCAGCA 1396 Query 56637 TGGGCACTTGCTCGTATGTCGTGACGGGCAAGGGCAA 56673 ||||||| || || ||||| ||||||||||| Sbjct 1397 TGGGCACGCGCAGCTACATCGTGCGTGGCAAGGGCAA 1433 Score = 82.4 bits (90), Expect = 3e-11 Identities = 92/128 (72%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 55841 GTGGCGCTGATGCCCGACGCGCATTACGGCAAGGGCTCAAGCGTCGGCACGGTGATCCCG 55900 ||||| ||||||| |||| ||| ||||||||| | | ||| ||| ||||||||||| Sbjct 598 GTGGCCGTGATGCCGGACGTGCACCTGGGCAAGGGCGCGACCGTGGGCTCGGTGATCCCG 657 Query 55901 ACTGAGGGCNNNNNNNNNNNNNNCGCGGTGGGCGTCGATATCGGTTGCGGCATGATCGCC 55960 || ||||| |||||| |||||||| ||||| ||||||||| ||| Sbjct 658 ACGCAGGGCGCGATCATCCCGGCCGCGGTCGGCGTCGACATCGGCTGCGGCATGGCCGCG 717 Query 55961 GCGCGCAC 55968 | |||||| Sbjct 718 GTGCGCAC 725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199758489812403