Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_023502.1 Length=109558 Score E Sequences producing significant alignments: (Bits) Value seq1878 87.8 1e-12 >seq1878 Length=10347 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/221 (71%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 31226 TACTCGGGAAGCTGGAACGGCACGTTCAAGTGGGCCTGGACGGATAACCCGGCGTGGGTG 31285 ||| |||||| |||| |||| || |||||| || ||||| || ||||| |||||| | Sbjct 9782 TACGCGGGAACCTGGGACGGAACTTTCAAGCTTGCGTGGACTGACAACCCTGCGTGGATT 9841 Query 31286 CTCTACGACATCATGACCAATGATCGCTTCGGTCTTGGCGAGGATATCGACGCCTC--GC 31343 |||| ||| || ||||||||||||| | || || || ||| || || |||| | Sbjct 9842 TTCTATGACCTCGTGACCAATGATCGGTATGGCCTGGGTGAGCGCAT--AC-CCTCCGGT 9898 Query 31344 AGG-TGGACAAGTGGTCGCTCTACGAGATCGCGCAATACGCAGACCAGAAC--GTGCCCG 31400 || |||| |||||| | | || |||| || | ||| || |||| ||||||| Sbjct 9899 TGGTTGGATAAGTGGGGGTTGTATCAGATAGCCCGGTACTGCGA--TGAACTAGTGCCCG 9956 Query 31401 ATGGCCGTGGCGGCAACAAGCCGCGCTTCACGTTCAACGGC 31441 |||| |||||| | |||| |||||||| | |||| || Sbjct 9957 ATGGATTTGGCGGGCAAGAGCCACGCTTCACCTGCAACTGC 9997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350446922737991