Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq1775 87.8 2e-12 seq3004 84.2 2e-11 >seq1775 Length=16941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 |||||||| ||| | || |||||| |||||||| ||||||| ||||| |||||||||| Sbjct 2657 TGGTGCCGCTTAGCAGACTCGAACTGCTGACCCCATCATTACGAATGATGTGCTCTACCA 2598 Query 72164 ACTGAGCTAAACCGGC 72179 ||||||||||| |||| Sbjct 2597 ACTGAGCTAAAGCGGC 2582 >seq3004 Length=8043 Score = 84.2 bits (92), Expect = 2e-11 Identities = 80/100 (80%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 76065 AAAATGGAGGAAGCGGTGGGATTCGAACCCACGGACCGTATCACTACGGCCTCCGGTTTT 76124 ||||||| ||| | |||||||||||||||||||| || ||| || || | |||||||| Sbjct 3510 AAAATGGCGGAGGGGGTGGGATTCGAACCCACGGTACG-ATCTCT-CGCACGCCGGTTTT 3453 Query 76125 CAAGACCGGTGTAATAAGCCGCTCTACCACGCTTCCGAAT 76164 ||||||||||| ||| |||||| |||| | |||| || Sbjct 3452 CAAGACCGGTGCCTTAAACCGCTCGGCCACCCCTCCGCAT 3413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554332686249440