Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq2112 111 5e-20 >seq2112 Length=10038 Score = 111 bits (122), Expect = 5e-20 Identities = 146/197 (74%), Gaps = 9/197 (5%) Strand=Plus/Plus Query 30194 CCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGT 30253 ||| ||||||| | | ||| ||||||||||||||||||||||||||||| || ||||| Sbjct 9140 CCGGCGATCTCGCCGAGCTTGCCGAAGAACACCACGCGGTGCCATTCGGTACGTTCCTGC 9199 Query 30254 TGCTGGCCGGTCTGCTTGTCCTTCCAG-CTCTCGCTGGTGGCGAGGGTGATGTTGGTCAC 30312 || | ||| | ||||||||| | | | || | ||||||| ||| ||||| ||| | Sbjct 9200 TGGTTGCC---ATCCTTGTCCTTGCGGACGCT-GGTGGTGGCCAGGCTGATGCGGGTGAT 9255 Query 30313 CGCATTGCCG--TTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGA 30370 ||| ||||| |||| || | | |||||||| |||| |||||| ||||| Sbjct 9256 CGCCATGCCGCTCTGGGTGTACTTCACG--TCCGGGTCGTTGCCGAGGTTGCCGACCAGG 9313 Query 30371 ATGACTTTGTTAACGCC 30387 ||||||||||| | ||| Sbjct 9314 ATGACTTTGTTGATGCC 9330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145632780997456