Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_023690.1 Length=110569 Score E Sequences producing significant alignments: (Bits) Value seq849 116 3e-21 seq1669 91.5 1e-13 >seq849 Length=7568 Score = 116 bits (128), Expect = 3e-21 Identities = 150/206 (73%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 97411 GGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTACGGGGTGAGTTCCACC 97470 || ||||| || ||||| || || || || ||||||| || || ||||||| | Sbjct 4707 GGATCGGTAACAACCGGGGTCAGCAGATGTGGAATACCGTCATAGATGGACAGTTCCAGC 4766 Query 97471 ATCTTCGGGTCGATCATGATGAGTTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAA 97530 |||||||| |||| |||||| || | || || ||| |||||||||| || Sbjct 4767 ATCTTCGGATCGACCATGATCAGGCGGCATTCTTCCGGCTTGAAACGGTAGAGCAGCGAC 4826 Query 97531 ACCAGCATCGAGTTGATGAAGCTGGACTTACCTGATCCGGTGGCGCCAGCCACCAGCAGG 97590 | | ||||| ||||||| | ||||||||||| ||||||| ||| |||||||| ||| Sbjct 4827 AGGATCATCGTGTTGATGGCGACCGACTTACCTGAGCCGGTGGTGCCTGCCACCAGAAGG 4886 Query 97591 TGCGGCATTTTGGCCAGGTTCAGGGA 97616 || ||||| ||||||| |||||| || Sbjct 4887 TGAGGCATCTTGGCCA-GTTCAGCGA 4911 >seq1669 Length=8647 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/164 (73%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 97125 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 97184 ||| | ||||| ||||| ||||| |||| || ||||| || || |||||||| ||||| Sbjct 6645 CGGGATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACCGACGGGCGCTGCGTGGCCAG 6586 Query 97185 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 97244 || || || || ||||| || ||||||||||| || | ||| | || |||| | Sbjct 6585 GATCAGGTGGATGCCGGCCGCACGCGCCTTCTGTGCCAGGCGCGCGATCAGCTCCTCCA- 6527 Query 97245 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGA 97288 | |||||| | || |||||| | ||| |||| |||||||| Sbjct 6526 --CCTTCTTGCCGACGATCATCATCATGTCGGCGAATTCGTCGA 6485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353681994633170