Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_023744.1 Length=60588 Score E Sequences producing significant alignments: (Bits) Value seq2875 104 9e-18 >seq2875 Length=2430 Score = 104 bits (114), Expect = 9e-18 Identities = 340/518 (66%), Gaps = 23/518 (4%) Strand=Plus/Plus Query 49753 CAGCTCGGAAGCCTCGGCGGCGGTAACCATTTCATCGAACTATGCCTGGACGAAACCGGC 49812 ||||| || | || |||||||| ||||| ||||||||||| ||||||||||| || | | Sbjct 934 CAGCTGGGTACGCTGGGCGGCGGCAACCACTTCATCGAACTGTGCCTGGACGAGACGGAC 993 Query 49813 CGGGTGTGGCTGTTCCTGCACTCCGGGTCGCGTGGCGTCGGCAACAAGATCGCCCAAAAG 49872 ||||||| || | |||||| ||| || || ||| ||||||| ||||| | | Sbjct 994 ACGGTGTGGGTGATGCTGCACAGCGGATCACGCGGCACCGGCAACCTGATCGGCACCTAC 1053 Query 49873 CACATCAAG--GTCGCGC-AGAAACT--CATGGACCGCTGGT-GGATT-CAGCTCCCAAG 49925 |||| || | ||||| || |||| | || || || | || || || || || Sbjct 1054 TTCATCGAGAAGGCGCGCGAGGAACTGGCCCGGCGCG-TGCTCGGCTTCCACCTGCCGGA 1112 Query 49926 CCCCGACCTGGCGTACTTGCCGCAAGGCACACCGGAGTTCGCCGACTATCTGCGGGAGCT 49985 | |||||||||| ||| | ||||| ||| ||||| ||||| | | | | Sbjct 1113 CAAGGACCTGGCGTTCTTCATGGAAGGCGAGCCGCTGTTCGATGACTACGTTGAAGCGGT 1172 Query 49986 GCACTGGGCGCAGCGGTTCGCGCTAGAGAACCGCGCCGAAATGATGGACCGTTTCGCTAT 50045 | ||||||||| | ||| | ||||||||| | ||||||| |||| Sbjct 1173 GTCGTGGGCGCAGGACTACGCCCGGCAGAACCGCGAGGCAATGATG-------TCGC--G 1223 Query 50046 CGTGTTCGGCGAGTGGATCGGGCA-CCCCACCGGCGGGGC--GCTGGTGGAAACCACGGT 50102 ||| | | ||| ||| | || | || | | | | ||||| | | |||| Sbjct 1224 GGTGCTGGCCGA---GATGCGCCATCGCCTGCCGAAGTTCCAGCTGGCAGCGATGGCGGT 1280 Query 50103 GAACACGCACCACAACTACACGACGCAGGAACGGCACGGCGGCCGCGACGTGTGGCTGAC 50162 |||| || ||||||||| | | |||| |||| || || || || | |||| Sbjct 1281 GAACTGCCATCACAACTACGTGCAGAAGGAGACGCACCACGACCAGGAGCTGCTGGTGAC 1340 Query 50163 CCGCAAGGGCGCCATCGACGCGCACGCCGGCGTGATGGGCCTGATCCCGGGCAGCATGGG 50222 |||||||| || || |||| || |||| | ||||| | || || ||||||||||| Sbjct 1341 GCGCAAGGGTGCGGTCAGTGCGCGCGAGGGCGAGCTGGGCATCATTCCCGGCAGCATGGG 1400 Query 50223 CACCCCGTCATACGTGGTGCGCGGCAAGGGCAACCCGG 50260 ||| | ||| | ||||| |||||||||||| ||| Sbjct 1401 CACGCGCAGCTACATCGTGCGTGGCAAGGGCAACGCGG 1438 Score = 93.3 bits (102), Expect = 2e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 49393 CCGTTCGTCCACCCGCATGTGGCGCTGATGCCCGACGCGCACGCCGGCAAGGGTTCATCG 49452 ||||||||| ||| ||||| ||||||| |||| |||| |||||||| | | Sbjct 580 CCGTTCGTCGGGCCGTGGGTGGCCGTGATGCCGGACGTGCACCTGGGCAAGGGCGCGACC 639 Query 49453 GTCGGCACCGTCATCCCGACTATCGACGCCGTGATCCCGGCCGCGGTGGGCGTGGACATC 49512 || ||| | || |||||||| | ||| | |||||||||||||| ||||| |||||| Sbjct 640 GTGGGCTCGGTGATCCCGACGCAGGGCGCGATCATCCCGGCCGCGGTCGGCGTCGACATC 699 Query 49513 GGCTGCGGGATGATCGCCGCCCGCAC 49538 |||||||| ||| ||| | ||||| Sbjct 700 GGCTGCGGCATGGCCGCGGTGCGCAC 725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193752524375900