Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_024359.1 Length=133048 Score E Sequences producing significant alignments: (Bits) Value seq1741 273 2e-68 >seq1741 Length=13656 Score = 273 bits (302), Expect = 2e-68 Identities = 645/966 (67%), Gaps = 10/966 (1%) Strand=Plus/Minus Query 92030 AGTGGTATCGTAAACTGGAACGATATTCGGTATCCATCTTTCTATCGAGCTTACAAAGAG 92089 || || ||| | ||||||||||| || | ||| || || |||||||| || ||||| ||| Sbjct 4775 AGCGGCATCCTCAACTGGAACGACATCCCGTACCCGTCGTTCTATCGGGCCTACAAGGAG 4716 Query 92090 TTAACTACAAATTACTGGTTGCCTGATGAGGTAGATATGAAGAGCGATGCCAAACAGTAC 92149 | | || || | |||| | ||||| ||||| || |||||| ||||||| |||||| Sbjct 4715 CTGTCGACCAACTTCTGGATTCCTGACGAGGTCGACATGAAGCTCGATGCCCGCCAGTAC 4656 Query 92150 AACCACTT--ATCCGAA-GAAGAGAAATATGCGTTTGACTCCATTATCGGACTTTTAGCT 92206 | | | || || ||| |||| || | |||||||| ||||| || | || Sbjct 4655 GGCGAGCTCAATGCGCGCGAAAAGAAC---GCCTACGACTCCATCATCGGCCTGCTGGCC 4599 Query 92207 ACACTTGACTCACCCCAAACACGTTTTATTTATAATATCGCAGAGTATGTCAGTGATGCC 92266 || || |||||||| || || || || || || || | || ||||| ||| ||| || Sbjct 4598 ACGCTCGACTCACCGCAGACCCGCTTCATCTACAACGTGGCCGAGTACATCACCGATCCC 4539 Query 92267 TCTGTTCATGCTATTACAGCTATTATTGCACAACAAGAAGCTATTCATAATGAGAGTTAT 92326 | | ||||| | | |||| || || | || || |||| || || || ||||| || Sbjct 4538 GCCGCGCATGCCAATGCAGCGATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTAC 4479 Query 92327 TCTTATGTACTTGCTTCTATTACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCT 92386 || || || || || || || || | | | ||||| || | || ||| || Sbjct 4478 AGCTACGTTCTGGCCTCGATCACCGACCTGCCGAACCAGAACCGCATCTTCGAGATCGCC 4419 Query 92387 AGAACACACCCTACGATTATTAAACGTAATGCACCTATTATGGAGTCTTATGACGATTTC 92446 | || ||||| || || || || || || ||||| || |||| | || ||||| ||| Sbjct 4418 CGCACCCACCCGACCATCATCAAGCGCAACGCACCGATCATGGGCGCGTACGACGACTTC 4359 Query 92447 ATGAATAATAAAACACCTGAGAATATGGTAAAAGCTTTAGTACAATCATCTATCTTAGAG 92506 ||| | || || | || | || | || | | | || || || ||| | || Sbjct 4358 ATGCGCGAGAAGACCGCCGAAACGCTGCTGAAGTCGCTGATCCAGTCCTCGATCCTGGAA 4299 Query 92507 GGTATTAATTTCTACAGCGGTTTTGCTTACTTCTATAACCTTGTTCGTCAAAACAAGATG 92566 || || || ||||| ||| ||||| |||||||| ||| | || || || ||| ||| Sbjct 4298 GGCATCAACTTCTATTCCGGGTTTGCGTACTTCTACAACATGGTGCGGCAGAACCGCATG 4239 Query 92567 ACGGGAACAGGTAAAATCATTAGCTTCATTAATCGTGATGAGTTAGCCCATTCGAAGTTT 92626 | || || || || ||||| |||||||| || || || ||| | || ||| | ||||| Sbjct 4238 AACGGCACCGGCAAGATCATCAGCTTCATCAACCGCGACGAGCTGGCGCATACCAAGTTC 4179 Query 92627 ATTTCTGAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACTA 92686 || ||||| || | || || | || || ||||| || || || || | || || Sbjct 4178 ATCAGCGAGCTGATCCGCGCCATCATCGGCGAGAACCCGGAGCTGCAGACCAACGAGCTG 4119 Query 92687 AATGACTACGTGTATGCTTCTTTTAGACATGCCGTAGAGCTAGAACAAGC-GTGGTCTAG 92745 | | ||||||| | || || || ||| | ||||| || | || |||||| Sbjct 4118 ACCGCCTACGTGCACCAATCGTTCGAGCACGCCATCGAGCTGGAG-ACGCAGTGGTCGTC 4060 Query 92746 TGAGGTACTACAGGGCATTGAAGGAATTGATGTGGAAGAAATGTTAGACTATGTAAAATA 92805 ||||| || | || || || || || || ||||| || ||| | ||| || || || Sbjct 4059 GGAGGTGCTGGACGGTATCGACGGCATCGACGTGGACGAGATGGTGCGCTACGTGAAGTA 4000 Query 92806 TCGTGCTAATAAAATGTTAGGGATGCTAGGTCTCCAACCAATGTATCAAGGTCAT-ACAG 92864 || || || || ||| || ||||| || || ||| |||| || | || || | Sbjct 3999 CCGCGCCAACAAGATGGCCGGCATGCTCGGCATCGAACGCCTGTA-CAGCGACACCACCG 3941 Query 92865 AAAATTCTATGACATGGATTAAAGCTTACGCCGATAATTTTACAGAAACAAAAACCGACT 92924 | || ||| | ||||| || || |||||||| || || || ||||| || ||||||| Sbjct 3940 ACAACGTGATGCCGTGGATCAAGGCCTACGCCGACAACTTCACTGAAACCAAGACCGACT 3881 Query 92925 TTTTCGAAATGCGTAACTCTAGTTACAAGAAAACAAACTTAGACAATGGGTTCGATGACT 92984 | ||||| ||||| || | ||||||||||| || ||| | ||||| || ||||| ||| Sbjct 3880 TCTTCGAGATGCGCAATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGACGACC 3821 Query 92985 TATGAG 92990 | |||| Sbjct 3820 TCTGAG 3815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425611946296601