Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_024360.1 Length=138036 Score E Sequences producing significant alignments: (Bits) Value seq1741 268 8e-67 >seq1741 Length=13656 Score = 268 bits (296), Expect = 8e-67 Identities = 637/955 (67%), Gaps = 12/955 (1%) Strand=Plus/Minus Query 104780 AACTGGAATGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAGGAGTTAACTACAAAT 104839 |||||||| || || | ||| ||||| |||||||| || ||||||||| | | || || Sbjct 4763 AACTGGAACGACATCCCGTACCCGTCGTTCTATCGGGCCTACAAGGAGCTGTCGACCAAC 4704 Query 104840 TACTGGTTGCCCGATGAGGTAGATATGAAGAGTGATGCCAAACAGTACAACCA-CTTA-- 104896 | |||| | || || ||||| || |||||| |||||| |||||| | | || | Sbjct 4703 TTCTGGATTCCTGACGAGGTCGACATGAAGCTCGATGCCCGCCAGTACGGCGAGCTCAAT 4644 Query 104897 -CCCGAAGAAGAGAAGTATGCGTTTGATTCCATTATTGGACTTTTAGCTACACTTGACTC 104955 | || || ||| | || | || ||||| || || || | || || || ||||| Sbjct 4643 GCGCGC----GAAAAGAACGCCTACGACTCCATCATCGGCCTGCTGGCCACGCTCGACTC 4588 Query 104956 ACCTCAAACACGTTTTATTTATAATATCGCAGAATATGTCAGTGATGCCTCTGTTCATGC 105015 ||| || || || || || || || | || || || ||| ||| || | | ||||| Sbjct 4587 ACCGCAGACCCGCTTCATCTACAACGTGGCCGAGTACATCACCGATCCCGCCGCGCATGC 4528 Query 105016 TATTACTGCTATCATTGCACAACAAGAAGCTATTCATAACGAAAGCTACTCTTATGTACT 105075 | | | || ||||| | || || |||| || || ||||| |||||| || || || Sbjct 4527 CAATGCAGCGATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTACAGCTACGTTCT 4468 Query 105076 TGCTTCTATTACTAACTTACAGGAGCAGAATCGAGTATTTGAGGAAGCTAGAACACACCC 105135 || || || || || | | | | ||||| || | || ||| || | || ||||| Sbjct 4467 GGCCTCGATCACCGACCTGCCGAACCAGAACCGCATCTTCGAGATCGCCCGCACCCACCC 4408 Query 105136 TACGATTATTAAACGTAATGCACCTATTATGGAGTCTTATGACGATTTCATGAATAATAA 105195 || || || || || || ||||| || |||| | || ||||| |||||| | || Sbjct 4407 GACCATCATCAAGCGCAACGCACCGATCATGGGCGCGTACGACGACTTCATGCGCGAGAA 4348 Query 105196 AACACCTGAGAATATGGTAAAAGCTTTAGTACAATCATCTATCTTAGAGGGTATTAATTT 105255 || | || | || | || | | | || || || ||| | || || || || || Sbjct 4347 GACCGCCGAAACGCTGCTGAAGTCGCTGATCCAGTCCTCGATCCTGGAAGGCATCAACTT 4288 Query 105256 CTACAGCGGTTTTGCTTACTTCTATAACCTCGTTCGTCAAAACAAGATGACAGGGACAGG 105315 ||| ||| ||||| |||||||| ||| | || || || ||| |||| || || || Sbjct 4287 CTATTCCGGGTTTGCGTACTTCTACAACATGGTGCGGCAGAACCGCATGAACGGCACCGG 4228 Query 105316 TAAAATCATCAGCTTCATTAATCGTGATGAGTTAGCCCATTCGAAGTTTATTTCTGAGCT 105375 || |||||||||||||| || || || ||| | || ||| | ||||| || ||||| Sbjct 4227 CAAGATCATCAGCTTCATCAACCGCGACGAGCTGGCGCATACCAAGTTCATCAGCGAGCT 4168 Query 105376 AATTAGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACTAAATGACTACGT 105435 || | || || | || || ||||| || || || || | || || | | |||||| Sbjct 4167 GATCCGCGCCATCATCGGCGAGAACCCGGAGCTGCAGACCAACGAGCTGACCGCCTACGT 4108 Query 105436 ATATGCTTCTTTTAGACATGCTGTAGAGCTAGAACAAGCA-TGGTCTAGTGAGGTACTAC 105494 | || || || || | ||||| || | ||| ||||| ||||| || Sbjct 4107 GCACCAATCGTTCGAGCACGCCATCGAGCTGGAG-ACGCAGTGGTCGTCGGAGGTGCTGG 4049 Query 105495 AGGGCATTGAAGGAATTGATGTGGAAGAAATGTTAGACTATGTAAAATATCGCGCTAATA 105554 | || || || || || || ||||| || ||| | ||| || || || ||||| || | Sbjct 4048 ACGGTATCGACGGCATCGACGTGGACGAGATGGTGCGCTACGTGAAGTACCGCGCCAACA 3989 Query 105555 AAATGTTAGGGATGCTAGGTCTCCAACCAATGTATCAAGGTCAC-ACAGAAAATTCTATG 105613 | ||| || ||||| || || ||| |||| || | ||| || || || ||| Sbjct 3988 AGATGGCCGGCATGCTCGGCATCGAACGCCTGTA-CAGCGACACCACCGACAACGTGATG 3930 Query 105614 ACATGGATTAAAGCTTACGCCGATAACTTTACAGAAACAAAAACCGATTTTTTCGAAATG 105673 | ||||| || || |||||||| ||||| || ||||| || ||||| || ||||| ||| Sbjct 3929 CCGTGGATCAAGGCCTACGCCGACAACTTCACTGAAACCAAGACCGACTTCTTCGAGATG 3870 Query 105674 CGTAACTCTAGTTACAAGAAAACAAACTTAGACAATGGGTTCGATGACTTATGAG 105728 || || | ||||||||||| || ||| | ||||| || ||||| ||| | |||| Sbjct 3869 CGCAATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGACGACCTCTGAG 3815 Score = 156 bits (172), Expect = 4e-33 Identities = 374/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Minus Query 102838 ATGAAGTTAGTAGAAGAGGCTTACTGGGCGTTAAGTAACTTGTATATGACAGTGGCAACT 102897 ||| || | || | |||||| ||||||||| | ||| |||| ||||| ||||| || Sbjct 6659 ATGCAGCTGGTCGGAGAGGCGTACTGGGCGCTGTCCAACCTGTACATGACGGTGGCCACA 6600 Query 102898 CCTACATTAGCAAATGCAGGTAAAGTAGGCGGGCAACTATCTAGTTGTTTTATAGATACG 102957 || || | || ||||| || || || |||||||| | || || || || || || ||| Sbjct 6599 CCGACCCTGGCCAATGCCGGCAAGGTGGGCGGGCAGTTGTCGAGCTGCTTCATCGACACG 6540 Query 102958 GTAGACGACAGTTTGCAAGGTATTTACGATAGTAATACAGATGTTGCTAGAGTTTCTAAG 103017 || |||||||| |||| || || || || || || ||| | || | ||||| || Sbjct 6539 GTGGACGACAGCCTGCAGGGCATCTATGACTCCAACACCGATATCGCCCGTGTTTCGAAA 6480 Query 103018 CAAGGCGGAGGCGTAGGAGTCTATATAGGCAATGTAAGGTCATCAGGGGCACCC--ATTA 103075 || ||||| ||||| || | |||| | ||| |||| | || ||| ||| | | || Sbjct 6479 CACGGCGGCGGCGTTGGTGCCTATCTGGGCTATGTGCG--CAGCAGCGGCGCGCCGATCC 6422 Query 103076 GAGGAGTTCTTGGTGCTAGTGGAGGAACGGTACCTTGGATTAAACAGTTGAATAACACGG 103135 | || || | | || || |||||| ||||| || ||| | || ||||| | Sbjct 6421 GTGGCGTGGCCAATTCCTCCGGTGGCGTGGTACCGTGGATCAAGCAGCTCAACAACACTG 6362 Query 103136 CTGTTAGTGTAGACCAACTAGG--AGCAAGAAAAGGCGCTATAAC--TGTAACGTTAGAC 103191 | || || || || || || ||| | || ||||| || | |||| | | ||| Sbjct 6361 CGGTGTCGGTTGATCAGCTCGGCCAGC--GCAAGGGCGCAGTAGCGGTGTACC--TGGAC 6306 Query 103192 GTTTTCCACAAAGATATAGAAGCCTTTCTGGATTTAAGACTAAACAACGGAGACCAACGT 103251 | | ||| ||||| |||||||| |||| | | || |||||||| ||||| || Sbjct 6305 ATCTGGCACCGCGATATCGAAGCCTTCATGGACCTGCGCCTCAACAACGGCGACCAGCGC 6246 Query 103252 TTACGAGCTCACGACATTTTTACTTCTGTTTCTATTCCTGATTTATTTATGGAAGCTGTA 103311 | || || ||||| | || ||||| || | | || || | || |||||||| || Sbjct 6245 CTGCGCGCGCACGATGTGTTCACTTCGGTCTGCGTGCCGGACCTGTTCATGGAAGCGGTC 6186 Query 103312 GAGAATAGAGGGGAATGGTATTTATTTGACCCTTACGAGGTTAAGCAGAAAAAAGGCTGG 103371 || | | || ||||| | || || || ||||||| |||||| || |||||| Sbjct 6185 GAACGCCGCGCCGACTGGTACCTGTTCGATCCGCACGAGGTGAAGCAGGCCAAGGGCTGG 6126 Query 103372 TACCTACAAGACTACTATGA 103391 |||||||| |||| ||| || Sbjct 6125 TACCTACAGGACTTCTACGA 6106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441569266039840