Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_024364.1 Length=131952 Score E Sequences producing significant alignments: (Bits) Value seq1741 259 4e-64 >seq1741 Length=13656 Score = 259 bits (286), Expect = 4e-64 Identities = 642/966 (66%), Gaps = 10/966 (1%) Strand=Plus/Plus Query 37996 CTCATAAGTCATCGAACCCATTATCTAAATTTGTTTTCTTGTAACTAGAGTTACGCATTT 38055 |||| | ||| ||||| || || || | || || ||||||||||| | || ||||| | Sbjct 3815 CTCAGAGGTCGTCGAAGCCGTTGTCGACGTTGGTCTTCTTGTAACTTGCATTGCGCATCT 3874 Query 38056 CGAAAAAGTCGGTTTTTGTTTCTGTAAAGTTATCGGCGTAAGCTTTAATCCATGTCATAG 38115 |||| |||||||| || ||||| || ||||| |||||||| || || ||||| | ||| Sbjct 3875 CGAAGAAGTCGGTCTTGGTTTCAGTGAAGTTGTCGGCGTAGGCCTTGATCCACGGCATCA 3934 Query 38116 AATTTTCTGT-ATGACCTTGATACATTGGTTGGAGACCTAGCATCCCTAACATTTTATTA 38174 || || || || | || |||| ||| || || ||||| || ||| || || Sbjct 3935 CGTTGTCGGTGGTGTCGCTG-TACAGGCGTTCGATGCCGAGCATGCCGGCCATCTTGTTG 3993 Query 38175 GCACGATATTTTACATAGTCTAACATTTCTTCCACATCAATTCCTTCAATGCCTTGTAGT 38234 || || || || || ||| | ||| || ||||| || || || || || || | || Sbjct 3994 GCGCGGTACTTCACGTAGCGCACCATCTCGTCCACGTCGATGCCGTCGATACCGTCCAGC 4053 Query 38235 ACCTCACTAGACCA-TGCTTGTTCTAGCTCTACAGCATGTCTAAAAGAAGCATACACGTA 38293 ||||| ||||| ||| | || ||||| | || || || || | |||||| Sbjct 4054 ACCTCCGACGACCACTGCGT-CTCCAGCTCGATGGCGTGCTCGAACGATTGGTGCACGTA 4112 Query 38294 GTCATTTAGTTCATCTGTTTGTAGTTCAGGGTTTTCCCCTACAATAGCTCTAATTAGCTC 38353 | | | || || | || || || || ||||| || || | || || | || ||||| Sbjct 4113 GGCGGTCAGCTCGTTGGTCTGCAGCTCCGGGTTCTCGCCGATGATGGCGCGGATCAGCTC 4172 Query 38354 AGAAATAAACTTCGAATGGGCTAACTCATCACGATTAATGAAGCTAATGATTTTACCTGT 38413 || ||||| | ||| || | ||| || || || |||||||| ||||| || || || Sbjct 4173 GCTGATGAACTTGGTATGCGCCAGCTCGTCGCGGTTGATGAAGCTGATGATCTTGCCGGT 4232 Query 38414 TCCCGTCATCTTGTTTTGACGAACAAGGTTATAGAAGTAAGCAAAACCGCTGTAGAAATT 38473 || |||| ||| || || || | ||| |||||||| ||||| ||| ||||| || Sbjct 4233 GCCGTTCATGCGGTTCTGCCGCACCATGTTGTAGAAGTACGCAAACCCGGAATAGAAGTT 4292 Query 38474 AATACCCTCTAAGATAGATGATTGTACTAAAGCTTTTACCATATTCTCAGGTGTTTTGTT 38533 || || || | ||| || || || | | | || | || | || | || || | Sbjct 4293 GATGCCTTCCAGGATCGAGGACTGGATCAGCGACTTCAGCAGCGTTTCGGCGGTCTTCTC 4352 Query 38534 ATTCATGAAATCGTCATAAGACTTCATAATAGGTGCATTACGTTTAATAATCGTAGGGTG 38593 |||||| ||||| || | ||| || ||||| || || || || || || ||||| Sbjct 4353 GCGCATGAAGTCGTCGTACGCGCCCATGATCGGTGCGTTGCGCTTGATGATGGTCGGGTG 4412 Query 38594 TGTTCTAGCTTCCTCAAATACTCGATTCTGCTCTTGTAAGTTAGTAATAGAAGCAAGTAC 38653 || | || ||| || | || ||||| | | | || || || || || || || Sbjct 4413 GGTGCGGGCGATCTCGAAGATGCGGTTCTGGTTCGGCAGGTCGGTGATCGAGGCCAGAAC 4472 Query 38654 ATAAGAATAACTCTCATTATGAATAGCTTCTTGTTGTGCAATAATAGCTGTAATAGCATG 38713 || || ||||| || || || |||| || || | || || |||| | | ||||| Sbjct 4473 GTAGCTGTAGCTCTCGTTGTGGATCACTTCCTGCTGGCCGATGATCGCTGCATTGGCATG 4532 Query 38714 AACAGAGGCATCACTGACATACTCTGCGATATTATAAATAAAACGTGTTTGGGGTGAGTC 38773 | | || ||| ||| ||||| || | || || || || || || || |||||||| Sbjct 4533 CGCGGCGGGATCGGTGATGTACTCGGCCACGTTGTAGATGAAGCGGGTCTGCGGTGAGTC 4592 Query 38774 AAGTGTAGCTAAAAGTCCGATAATGGAGTCAAACGCATATTTCTCTTC-TTCGGAT--AA 38830 || || || | || ||||| |||||||| | || |||| ||| || || | Sbjct 4593 GAGCGTGGCCAGCAGGCCGATGATGGAGTCGTAGGC---GTTCTTTTCGCGCGCATTGAG 4649 Query 38831 GTGGTTGTACTGTTTGGCATCGCTCTTCATATCTACCTCATCAGGCAACCAGTAATTTGT 38890 | | |||||| ||||||| |||||| || ||||| ||||| | |||| | || || Sbjct 4650 CTCGCCGTACTGGCGGGCATCGAGCTTCATGTCGACCTCGTCAGGAATCCAGAAGTTGGT 4709 Query 38891 AGTTAACTCTTTGTAAGCTCGATAGAAAGATGGATACCGAATATCGTTCCAGTTTACGAT 38950 | | ||| ||||| || |||||||| || || ||| | || ||||||||||| | ||| Sbjct 4710 CGACAGCTCCTTGTAGGCCCGATAGAACGACGGGTACGGGATGTCGTTCCAGTTGAGGAT 4769 Query 38951 ACCACT 38956 || || Sbjct 4770 GCCGCT 4775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422104885171857