Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq1893 230 8e-56 >seq1893 Length=8132 Score = 230 bits (254), Expect = 8e-56 Identities = 649/976 (66%), Gaps = 47/976 (5%) Strand=Plus/Plus Query 16162 GTGCTTGCCGCGCTGCTGCTCAATAACCGATTTCGCAACGTCGTTCAGCACTACCAAGCG 16221 |||| ||||||||||| ||| | ||| | || |||||||||||||| || | ||| Sbjct 57 GTGCAGGCCGCGCTGCTTGCGAATGATCGACCTGGCCACGTCGTTCAGCACGACTAGGCG 116 Query 16222 CTCATCCCGGTTCTTCACACCGGACTTCGCGCTTCGGCCGCCAAACCCAGCTGGAATCAG 16281 || || | ||||| |||||||| | || || ||||| || |||| || ||||| Sbjct 117 TTCCTCGCCATTCTTGACACCGGAATCATCGAAACGCCCGCCGAAATCAGCGGGTATCAG 176 Query 16282 GAATACGCTTGTTCCCAGCTCCGGCACCGCAATCTCCCAATCCCATTGCAGCTTACAAAC 16341 ||| ||||| ||| |||| ||||| ||| ||| ||||| |||||| |||| || ||||| Sbjct 177 GAAGACGCTGGTTTCCAGGTCCGGAACCTTAATTTCCCACTCCCATCGCAGTTTGCAAAC 236 Query 16342 CTCCTGCTCGCGGCAACCGGTGTTCACCTTGAACATCGCCATCGTCTGCAGGTGGGCCGG 16401 |||||| |||||||| || |||||||||||| | | ||||| | | ||||||| | || Sbjct 237 CTCCTGTTCGCGGCATCCCGTGTTCACCTTGTAGAGGGCCATAGCCAGCAGGTGTTCGGG 296 Query 16402 CAACTCGGCGAACAGAATCGATTGCTCCTCCCACGACAGTGGGTAGGGCTTGCGGCAGTT 16461 | || |||||| || | |||||| ||||| || ||||| || |||| || | Sbjct 297 GAGTTCCTTGAACAGGATGGCTTGCTCATCCCATGAAAGTGGATACGGCTGCCGTC---G 353 Query 16462 CGTCTTTTCGTCCAGCAAGGAGATCATCGGCACCACGTC--AAGCCACGGACGCCGCTCC 16519 || || ||| |||| |||||| ||||| ||| |||||||| | || ||| Sbjct 354 CGATTTCTCGCTGAGCATTTCGATCATGGGCAC--GGTCCGGAGCCACGGCCTACGATCC 411 Query 16520 TCATCCCGCCACTTCCTTGCGCACAAGTTCAAAACCCGAATGACGCGTTGCAGTGCGATA 16579 || |||||||| || || ||||| | ||| | || || | ||||| ||||| || || Sbjct 412 TCGTCCCGCCATTTTCTGGCGCAGACGTTGAGGACGCGGACCACGCGCTGCAGGGCTATG 471 Query 16580 TTCACAGTTCTGTTCGTGACCGGCTTTCCATTCTCCGGCTCAAGCTTCGACCGTATATAG 16639 || | || | ||| |||| ||| |||| | || | | ||| || ||| Sbjct 472 TTGATCGTGC--GCGGTGCGCGGC---CCA-GCTCCAG-TCGATCCTCG-----ATGTAG 519 Query 16640 GGTGCCAGCGCGTCATCGTCCACATGAGTGATTGGCATGTGCCCGATAAACGGATCAAGC 16699 ||| ||| || || ||||| || | | | || | |||||| | ||||| ||| Sbjct 520 GGTTGCAGGGCCTCGTCGTCGACCTCATCCAGATACAGCTCCCCGATGTATGGATCGAGC 579 Query 16700 TGTGACATGTAAGTGGCTGAAATATGGATCGAAGGCTGAT-TTCTCACTTCCATCAGGAA 16758 || || ||| || | | | ||| |||||||||| | || ||| | ||| | Sbjct 580 TGCTTCAAGTAGGTACCGGTGAGCCAGATTGAAGGCTGATGCGCGTAC-TCCTTTAGGTA 638 Query 16759 GCGGATAGAGGCCTCTCTCCACGTCCGAACCTGACGCACGCCGTACACCTTCCGCTGCCG 16818 |||| | | || |||| | ||| |||| | || | | ||| || ||| Sbjct 639 GCGGGTCGCTGCGTCTCGGAAGGTCTTTCGCTGA-TCCTGCTGCTCGGCTTTGGCGGCCT 697 Query 16819 CAGCTTTTCCAGCATGTG---GATCAGGTACTGCTCGGCTTCCGCCCGGTCACAAGTGCC 16875 || ||| | ||| | | ||| | ||||| ||||| || || ||| ||||| Sbjct 698 GGGC--TTCGAAGATGCGCGCAAGGAGGAATTGCTCTGCTTCTGCGCGTACACCTGTGCC 755 Query 16876 AGTACTTTCTTGAATTCG---TTCTCCTCGGTATTTTTTGTCGATTTTCCAGATGCCGTT 16932 ||| || || ||||||| | || || |||||||| | |||||| || || Sbjct 756 AGTGCTGCCTCGAATTCGGCCATGCCCGTGGACGACCTTGTCGATGTGCCAGAT-CCCTT 814 Query 16933 CGGCATTT--TCTGGAGGCCGGTGATTGCTTTTTGGGCCAT---GCCGTTACTCCTGTGG 16987 | ||| | ||| |||||||||| |||||| |||| | | ||||| ||| Sbjct 815 C----TTTGAGCGTGAGCCCGGTGATTGTTTTTTGCCCCATAGGTTTGATGCTCCT-TGG 869 Query 16988 CCCCGGCATGGCGCTCGCTGCG--GGGCTGATTGTTGTCCTGATTGGCTGCCTTTTCAAT 17045 | ||| ||||||||||||| |||| || |||| || | |||||||| ||||| Sbjct 870 CTATGGC--GGCGCTCGCTGCGTTGGGC--ATCGTTGCCCGCAGGTGCTGCCTTGTCAAT 925 Query 17046 CGCCTTGCTCTCGACGTAGGCATCCGCCCACGCGTCGAGCTCCAGCCGATCAAAGCCGAC 17105 ||| ||| |||| | || | || || |||||| ||| ||||| ||| | | Sbjct 926 TGCCATGCGCTCGGCATACTCGTCTGCGACTTGGTCGAGTTCCTTGCGATCGAAGGCAAT 985 Query 17106 GCCTTGTTTTCCAATG 17121 ||||||||||| ||| Sbjct 986 CCCTTGTTTTCCGATG 1001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163360097017976