Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_024366.1 Length=62661 Score E Sequences producing significant alignments: (Bits) Value seq2875 84.2 9e-12 >seq2875 Length=2430 Score = 84.2 bits (92), Expect = 9e-12 Identities = 88/113 (78%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 53826 CAACTCGGCACACTCGGCGGCGGCAACCACTTCATCGAACTGTGCGTCGACCAGCACGG- 53884 || || || || || |||||||||||||||||||||||||||||| | ||| || |||| Sbjct 934 CAGCTGGGTACGCTGGGCGGCGGCAACCACTTCATCGAACTGTGCCTGGACGAG-ACGGA 992 Query 53885 CCGGCTGTGGCTGTTCCTGCATTCCGGTTCACGCGGTGTCGGCAACAAGATCG 53937 | | ||||| || | ||||| ||| |||||||| ||||||| ||||| Sbjct 993 CACGGTGTGGGTGATGCTGCACAGCGGATCACGCGGCACCGGCAACCTGATCG 1045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200382465103758