Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_024383.1 Length=135831 Score E Sequences producing significant alignments: (Bits) Value seq1741 282 4e-71 >seq1741 Length=13656 Score = 282 bits (312), Expect = 4e-71 Identities = 646/965 (67%), Gaps = 8/965 (1%) Strand=Plus/Minus Query 96205 AGTGGTATCGTAAACTGGAACGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAAGAG 96264 || || ||| | ||||||||||| || | ||| ||||| |||||||| || ||||| ||| Sbjct 4775 AGCGGCATCCTCAACTGGAACGACATCCCGTACCCGTCGTTCTATCGGGCCTACAAGGAG 4716 Query 96265 TTAACTACAAATTACTGGTTGCCTGATGAGGTAGATATGAAGAGCGATGCCAAACAGTAC 96324 | | || || | |||| | ||||| ||||| || |||||| ||||||| |||||| Sbjct 4715 CTGTCGACCAACTTCTGGATTCCTGACGAGGTCGACATGAAGCTCGATGCCCGCCAGTAC 4656 Query 96325 AACCACTT--ATCCGAAGAAGAGAAGTATGCGTTTGACTCCATTATCGGACTTTTAGCTA 96382 | | | || || || ||| | || | |||||||| ||||| || | || | Sbjct 4655 GGCGAGCTCAATGCGCGC--GAAAAGAACGCCTACGACTCCATCATCGGCCTGCTGGCCA 4598 Query 96383 CACTTGACTCACCCCAAACACGTTTTATTTATAATATCGCAGAGTATGTCAGTGATGCCT 96442 | || |||||||| || || || || || || || | || ||||| ||| ||| || Sbjct 4597 CGCTCGACTCACCGCAGACCCGCTTCATCTACAACGTGGCCGAGTACATCACCGATCCCG 4538 Query 96443 CCGTTCATGCTATTACAGCTATCATTGCACAACAAGAAGCTATTCATAATGAGAGTTATT 96502 ||| ||||| | | |||| ||||| | || || |||| || || || ||||| || Sbjct 4537 CCGCGCATGCCAATGCAGCGATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTACA 4478 Query 96503 CTTATGTACTTGCTTCTATTACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCTA 96562 || || || || || || || || | | | ||||| || | || ||| || Sbjct 4477 GCTACGTTCTGGCCTCGATCACCGACCTGCCGAACCAGAACCGCATCTTCGAGATCGCCC 4418 Query 96563 GAACACACCCTACGATTATTAAACGTAATGCACCTATTATGAAGTCTTATGACGATTTCA 96622 | || ||||| || || || || || || ||||| || ||| | || ||||| |||| Sbjct 4417 GCACCCACCCGACCATCATCAAGCGCAACGCACCGATCATGGGCGCGTACGACGACTTCA 4358 Query 96623 TGAATAACAAAACACCTGAGAATATGGTAAAAGCTTTAGTACAATCATCTATCTTAGAGG 96682 || | || || | || | || | || | | | || || || ||| | || | Sbjct 4357 TGCGCGAGAAGACCGCCGAAACGCTGCTGAAGTCGCTGATCCAGTCCTCGATCCTGGAAG 4298 Query 96683 GTATTAATTTCTACAGCGGTTTTGCTTACTTCTACAACCTCGTTCGTCAAAACAAGATGA 96742 | || || ||||| ||| ||||| |||||||||||| | || || || ||| |||| Sbjct 4297 GCATCAACTTCTATTCCGGGTTTGCGTACTTCTACAACATGGTGCGGCAGAACCGCATGA 4238 Query 96743 CGGGGACAGGTAAAATCATTAGCTTCATTAATCGTGATGAATTAGCCCATTCGAAATTTA 96802 || || || || ||||| |||||||| || || || || | || ||| | || || | Sbjct 4237 ACGGCACCGGCAAGATCATCAGCTTCATCAACCGCGACGAGCTGGCGCATACCAAGTTCA 4178 Query 96803 TTTCTGAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACTAA 96862 | ||||| || | || || | || || ||||| || || || || | || || | Sbjct 4177 TCAGCGAGCTGATCCGCGCCATCATCGGCGAGAACCCGGAGCTGCAGACCAACGAGCTGA 4118 Query 96863 ATGACTACGTGTACGCTTCTTTTAGACATGCCGTAGAGCTAGAACAAGC-GTGGTCTAGT 96921 | ||||||| || || || || ||| | ||||| || | || |||||| Sbjct 4117 CCGCCTACGTGCACCAATCGTTCGAGCACGCCATCGAGCTGGAG-ACGCAGTGGTCGTCG 4059 Query 96922 GAGGTACTACAAGGCATTGAAGGAATTGATGTGGAAGAAATGTTAGACTATGTAAAATAT 96981 ||||| || | || || || || || || ||||| || ||| | ||| || || || Sbjct 4058 GAGGTGCTGGACGGTATCGACGGCATCGACGTGGACGAGATGGTGCGCTACGTGAAGTAC 3999 Query 96982 CGTGCTAATAAAATGTTAGGGATGTTAGGTCTTCAACCAATGTATCAAGGTCAC-ACAGA 97040 || || || || ||| || ||| | || | ||| |||| || | ||| || || Sbjct 3998 CGCGCCAACAAGATGGCCGGCATGCTCGGCATCGAACGCCTGTA-CAGCGACACCACCGA 3940 Query 97041 AAATTCTATGACATGGATTAAAGCTTACGCCGATAACTTTACAGAAACAAAAACCGACTT 97100 || ||| | ||||| || || |||||||| ||||| || ||||| || |||||||| Sbjct 3939 CAACGTGATGCCGTGGATCAAGGCCTACGCCGACAACTTCACTGAAACCAAGACCGACTT 3880 Query 97101 TTTCGAAATGCGTAACTCTAGTTACAAGAAAACAAACTTAGACAATGGGTTCGATGACTT 97160 ||||| ||||| || | ||||||||||| || ||| | ||||| || ||||| ||| | Sbjct 3879 CTTCGAGATGCGCAATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGACGACCT 3820 Query 97161 ATGAG 97165 |||| Sbjct 3819 CTGAG 3815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434513552601640