Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3 167 5e-36 >seq3 Length=15630833 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| || || || || ||||| || || ||||| || || || || || Sbjct 4184800 CCTCCTCTGAGACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAA 4184741 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| || || || || || ||||| || ||||| ||||| || |||||||| || Sbjct 4184740 AGAGTTCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGG 4184681 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| ||||| ||||| ||||| ||||| || || || ||| || ||| ||| Sbjct 4184680 ATTCCCTCCTTGTCTTGGATCTTGGCTTTGACATTCTCGATTGTGTCAGAAGCTTCCACT 4184621 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||| || || | ||||| || || || ||||| Sbjct 4184620 TCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 4184574 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| || || ||||| ||||| || || ||||| || || || || || Sbjct 4183833 CCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAA 4183774 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| ||||| || || || ||||| || ||||| ||||| || || ||||| || Sbjct 4183773 AGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 4183714 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| || || ||||| ||||| || || ||||| || || || Sbjct 4183713 ATTCCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACC 4183654 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||| || || || || ||||||||||| || || || || ||||| ||| Sbjct 4183653 TCCAGGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCATGATT 4183603 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| | || |||||||| || ||||| || || ||||| | Sbjct 4185304 TACCTCCACGGAGACGAAGAACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGG 4185245 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || ||||| ||||| || ||||| ||||| || || ||||| | Sbjct 4185244 AAAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTG 4185185 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| ||||||||||| ||||| ||||| || || || ||| || ||| | Sbjct 4185184 GAATTCCCTCCTTGTCTTGAATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCTTCGA 4185125 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | ||| || ||||| || |||| ||||| || || ||||||||| Sbjct 4185124 CCTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4185075 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| || || ||||| ||||| || || ||||| || || || || || Sbjct 4185530 CCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4185471 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || || || || |||||||| ||||| | || ||| |||||||| || Sbjct 4185470 AAGGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGCGGG 4185411 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| || || ||||| ||||| ||||| || || || ||| ||| Sbjct 4185410 ATTCCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGACT 4185351 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||| || || | |||||| || || |||||||| Sbjct 4185350 TCCAAAGTGATGGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4185304 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | || ||||| ||||| ||||| ||||| ||||| || || || || || Sbjct 4184061 CCTCCTCTGAGGCGGAGAACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAG 4184002 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || ||||| || ||||| ||||| || |||||||| || Sbjct 4184001 AGGGTACGTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGG 4183942 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| ||||||||||| || || ||||| ||||| ||||| || || || Sbjct 4183941 ATTCCCTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTATCGGAAGCCTCGACC 4183882 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || ||||| || || | ||||| || || || |||||| Sbjct 4183881 TCCAAAGTGATGGTCTTTCCAGTGAGTGTCTTGACGAAGATTTGCATT 4183834 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| || || | || || || || || || || || || ||||| | Sbjct 4185760 TACCTCCACGGAGACGAAGGACAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCCG 4185701 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||||||| ||||| | ||| || || || ||||| ||||||||||| ||||| | Sbjct 4185700 ACAGAGTTCTACCATCTTCCAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGTG 4185641 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||| || ||||| || || || ||||| || || ||| || ||| | Sbjct 4185640 GGATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGA 4185581 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | ||| || ||||| || |||| ||||| || || ||||||||| Sbjct 4185580 CCTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4185531 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | | ||| ||||| ||||| ||||| || || ||||| || || || || || Sbjct 1643867 ACCTCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 1643926 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | || || || ||||| ||||| || ||||| | |||||| || ||||| || Sbjct 1643927 GAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGG 1643986 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||| ||||| ||||| || || ||||| || || ||||| | || || Sbjct 1643987 AATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGAC 1644046 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | || || ||||| || |||| ||||| || || || ||||| Sbjct 1644047 TTCGAGGGTAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 1644094 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| | ||| |||||||| || ||||| || || || || | Sbjct 4184574 TACCTCCACGAAGACGAAGAACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCG 4184515 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| || || || || || || || ||||| | |||||| |||||||| | Sbjct 4184514 AGAGGGTACGACCATCCTCAAGCTGCTTCCCGGCGAAGATCAATCTTTGCTGATCTGGTG 4184455 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || || ||||| ||||| || |||||||| || || | ||| | Sbjct 4184454 GAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTTTCAATAGTGTCCGAGGCTTCAA 4184395 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | ||| || ||||| || || | || || || || ||||||||| Sbjct 4184394 CCTCTAGAGTGATAGTCTTTCCAGTAAGAGTTTTCACGAAAATCTGCATT 4184345 Score = 131 bits (144), Expect = 3e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| | ||||||||||||||| || ||||||||||| || || ||||| || Sbjct 4185899 CCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCC 4185840 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| || || || ||| ||||||||||| || ||||| || || | | Sbjct 4185839 TTGACATTCTCAATGGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTAAGC 4185780 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| Sbjct 4185779 GTCTTGACGAAGATCTGCAT 4185760 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| ||||| | || || || || || || || || || || || || Sbjct 4186262 CCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAC 4186203 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | ||||| || || || |||||||| ||||| | | || || ||||| || Sbjct 4186202 AAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGG 4186143 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| || || || || ||||| || || || ||| || || ||| Sbjct 4186142 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAAGCCTCGACT 4186083 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || | ||||| ||||| |||||||| Sbjct 4186082 TCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 4186036 Score = 120 bits (132), Expect = 6e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| ||||| ||||| || || ||||| || ||||| ||||| || || ||||| Sbjct 4184944 TTACCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTTG 4184885 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| ||||| || || || ||| ||||| | || |||||||| || ||| Sbjct 4184884 GCTTTGACATTCTCAATGGTGTCCGAAGCTTCAACTTCGAGGGTGATCGTCTTTCCGGTC 4184825 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 |||||||| || || ||||||||| Sbjct 4184824 AACGTCTTGACGAAGATCTGCATT 4184801 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| | || ||| |||||||| || ||||||||||| ||||| ||||| Sbjct 4184205 TTACCGGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTA 4184146 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| ||||| || || | ||| ||||| | || || || || || || Sbjct 4184145 GCCTTGACATTCTCAATGGTGTCGGAGGCTTCGACTTCGAGTGTGATGGTTTTTCCAGTG 4184086 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || ||||||||| Sbjct 4184085 AGTGTCTTGACGAAGATCTGCATT 4184062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981786328681411