Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 >seq3 Length=15630833 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||| || || || ||||| ||| || ||| |||||||||||| Sbjct 4186239 ATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTCGAGCTG 4186180 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| | || | ||||||||||| || ||||| ||||||||||| ||| || Sbjct 4186179 CTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTT 4186120 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||| | ||||| | | ||| || || | ||||| ||| || ||||| Sbjct 4186119 GGCCTTGACATTCTCGATGGTGTCAGAAGCCTCGACTTCCAAGGTGATGGTCTTTCCGGT 4186060 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || |||||||| Sbjct 4186059 AAGAGTCTTGACAAAGATCTGCAT 4186036 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || | || |||||| |||||||| || Sbjct 4183803 GTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCGTCCTCAAGCTGCTTTCCG 4183744 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 ||| | ||||| | ||||||||| || ||||| ||||||||||| ||| ||| || || Sbjct 4183743 GCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGAT-TTTGGCTTT 4183685 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | || |||| | |||||| || | ||||| ||||| || |||| || Sbjct 4183684 GACATTCTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTTTTCCTGTCAACGT 4183625 Query 133643 TTTTACGAAAATCTGCATG 133661 ||| ||||| || |||||| Sbjct 4183624 TTTGACGAAGATTTGCATG 4183606 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| | || | | | |||||||| ||||| || Sbjct 1643898 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCA-TCCTCGAGTTGCTTTCC 1643956 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | | |||||||| || || || ||||||||||| |||||| ||| Sbjct 1643957 GGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTT 1644016 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | || |||| || ||| || |||| ||| | || || || |||||||| Sbjct 1644017 GACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGAGT 1644076 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || ||||| || |||||| || Sbjct 1644077 CTTGACGAAGATTTGCATGACT 1644098 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| || || | | | ||||| |||||||| || Sbjct 4185500 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCA-TCCTCAAGCTGCTTTCC 4185442 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 ||| | || | || ||||| || || ||||| ||||||||||| ||| ||| || | Sbjct 4185441 AGCGAAGATCAATCGTTGCTGATCTGGCGGGATTCCTTCCTTGTCTTGGAT-TTTGGCTT 4185383 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| | | || || || | |||| ||| || ||||| || | Sbjct 4185382 TGACATTCTCAATGGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTAAGCG 4185323 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 4185322 TCTTGACGAAGATCTGCAT 4185304 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || | | | | |||| ||||| |||||||| | Sbjct 4184542 GTAGACTCCTTCTGGATGTTGTAGTC--CGAGAGGGTACGACCATCCTCAAGCTGCTTCC 4184485 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | | ||||| || || || || ||||||||||| |||||| | Sbjct 4184484 CGGCGAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCTT 4184425 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| | || || || || | |||| || || || || |||| Sbjct 4184424 TGACGTTTTCAATAGTGTCCGAGGCTTCAACCTCTAGAGTGATAGTCTTTCCAGTAAGAG 4184365 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| |||||||||||||| Sbjct 4184364 TTTTCACGAAAATCTGCAT 4184346 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 || ||||| || || ||||| ||||||||||| |||||| ||||| | ||||| Sbjct 4184187 CGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCAATG 4184128 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 ||||||| || || || |||| |||| |||||| || || || || || ||||| ||| Sbjct 4184127 GTGTCGGAGGCTTCGACTTCGAGTGTGATGGTTTTTCCAGTGAGTGTCTTGACGAAGATC 4184068 Query 133656 TGCAT 133660 ||||| Sbjct 4184067 TGCAT 4184063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483401167072760