Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4 107 5e-18 >seq4 Length=19682253 Score = 107 bits (118), Expect = 5e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 || ||| |||| || ||| ||||||||||||| | || ||||| || || ||||| || Sbjct 9072779 CACTTGGATGATAACGATGTGGTTCTGTTCAATCGTCAGCCATCTCTTCACAAAATCTCC 9072838 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || ||| ||| | ||||| | | ||| |||||| |||| |||| ||||| Sbjct 9072839 ATCATGAGTCACCGTGCTAAAGTTATGCCAGGAAGGACATTCAGATTCAATGAGTGTGCT 9072898 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||| || || ||||| ||||| ||||||||||| ||||| | ||| |||| ||| Sbjct 9072899 TGTACTCCATACAATGCCGATTTCGATGGAGATGAGATGAACTTACATTTACCACAA 9072955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186763395579289