Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_024787.1 Length=132541 Score E Sequences producing significant alignments: (Bits) Value seq1741 279 4e-70 >seq1741 Length=13656 Score = 279 bits (308), Expect = 4e-70 Identities = 645/965 (67%), Gaps = 8/965 (1%) Strand=Plus/Minus Query 98784 AGTGGTATCGTAAACTGGAACGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAAGAG 98843 || || ||| | ||||||||||| || | ||| ||||| |||||||| || ||||| ||| Sbjct 4775 AGCGGCATCCTCAACTGGAACGACATCCCGTACCCGTCGTTCTATCGGGCCTACAAGGAG 4716 Query 98844 TTAACTACAAATTACTGGTTGCCTGATGAGGTAGATATGAAGAGCGATGCCAAACAGTAC 98903 | | || || | |||| | ||||| ||||| || |||||| ||||||| |||||| Sbjct 4715 CTGTCGACCAACTTCTGGATTCCTGACGAGGTCGACATGAAGCTCGATGCCCGCCAGTAC 4656 Query 98904 AACCACTT--ATCCGAAGAAGAGAAGTATGCGTTTGACTCCATTATCGGACTTTTAGCTA 98961 | | | || || || ||| | || | |||||||| ||||| || | || | Sbjct 4655 GGCGAGCTCAATGCGCGC--GAAAAGAACGCCTACGACTCCATCATCGGCCTGCTGGCCA 4598 Query 98962 CACTTGACTCACCCCAAACACGTTTTATTTATAACATTGCAGAGTATGTCAGTGATGCCT 99021 | || |||||||| || || || || || || ||| | || ||||| ||| ||| || Sbjct 4597 CGCTCGACTCACCGCAGACCCGCTTCATCTACAACGTGGCCGAGTACATCACCGATCCCG 4538 Query 99022 CCGTTCATGCTATTACAGCTATCATTGCACAACAAGAAGCTATTCATAATGAGAGTTATT 99081 ||| ||||| | | |||| ||||| | || || |||| || || || ||||| || Sbjct 4537 CCGCGCATGCCAATGCAGCGATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTACA 4478 Query 99082 CTTATGTACTTGCTTCTATTACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCTA 99141 || || || || || || || || | | | ||||| || | || ||| || Sbjct 4477 GCTACGTTCTGGCCTCGATCACCGACCTGCCGAACCAGAACCGCATCTTCGAGATCGCCC 4418 Query 99142 GAACACACCCTACGATTATTAAACGTAATGCACCTATTATGAAGTCTTATGACGATTTCA 99201 | || ||||| || || || || || || ||||| || ||| | || ||||| |||| Sbjct 4417 GCACCCACCCGACCATCATCAAGCGCAACGCACCGATCATGGGCGCGTACGACGACTTCA 4358 Query 99202 TGAATAACAAAACACCTGAGAATATGGTAAAAGCTTTAGTACAATCATCTATCTTAGAGG 99261 || | || || | || | || | || | | | || || || ||| | || | Sbjct 4357 TGCGCGAGAAGACCGCCGAAACGCTGCTGAAGTCGCTGATCCAGTCCTCGATCCTGGAAG 4298 Query 99262 GTATTAATTTCTACAGCGGTTTTGCTTACTTCTATAACCTTGTTCGTCAAAACAAGATGA 99321 | || || ||||| ||| ||||| |||||||| ||| | || || || ||| |||| Sbjct 4297 GCATCAACTTCTATTCCGGGTTTGCGTACTTCTACAACATGGTGCGGCAGAACCGCATGA 4238 Query 99322 CGGGAACAGGTAAAATCATTAGCTTCATTAATCGTGATGAGTTAGCCCATTCGAAGTTTA 99381 || || || || ||||| |||||||| || || || ||| | || ||| | ||||| | Sbjct 4237 ACGGCACCGGCAAGATCATCAGCTTCATCAACCGCGACGAGCTGGCGCATACCAAGTTCA 4178 Query 99382 TTTCTGAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACTAA 99441 | ||||| || | || || | || || ||||| || || || || | || || | Sbjct 4177 TCAGCGAGCTGATCCGCGCCATCATCGGCGAGAACCCGGAGCTGCAGACCAACGAGCTGA 4118 Query 99442 ATGACTACGTGTATGCTTCTTTTAGACATGCCGTAGAGCTAGAACAAGC-GTGGTCTAGT 99500 | ||||||| | || || || ||| | ||||| || | || |||||| Sbjct 4117 CCGCCTACGTGCACCAATCGTTCGAGCACGCCATCGAGCTGGAG-ACGCAGTGGTCGTCG 4059 Query 99501 GAGGTACTACAGGGCATTGAAGGAATTGATGTGGAAGAAATGTTAGACTATGTAAAATAT 99560 ||||| || | || || || || || || ||||| || ||| | ||| || || || Sbjct 4058 GAGGTGCTGGACGGTATCGACGGCATCGACGTGGACGAGATGGTGCGCTACGTGAAGTAC 3999 Query 99561 CGTGCTAATAAAATGTTAGGGATGCTAGGTCTCCAACCAATGTATCAAGGTCAT-ACAGA 99619 || || || || ||| || ||||| || || ||| |||| || | || || || Sbjct 3998 CGCGCCAACAAGATGGCCGGCATGCTCGGCATCGAACGCCTGTA-CAGCGACACCACCGA 3940 Query 99620 AAATTCTATGACATGGATTAAAGCTTACGCCGATAATTTTACAGAAACAAAAACCGACTT 99679 || ||| | ||||| || || |||||||| || || || ||||| || |||||||| Sbjct 3939 CAACGTGATGCCGTGGATCAAGGCCTACGCCGACAACTTCACTGAAACCAAGACCGACTT 3880 Query 99680 TTTCGAAATGCGTAACTCTAGTTACAAGAAAACAAATTTAGATAATGGGTTCGATGACTT 99739 ||||| ||||| || | ||||||||||| || || | || || || ||||| ||| | Sbjct 3879 CTTCGAGATGCGCAATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGACGACCT 3820 Query 99740 ATGAG 99744 |||| Sbjct 3819 CTGAG 3815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423989610539078